Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18770

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18765 and ABZR87_RS18770 are separated by 94 nucleotidesABZR87_RS18770 and ABZR87_RS18775 are separated by 16 nucleotidesABZR87_RS18775 and ABZR87_RS18780 are separated by 457 nucleotidesABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotides ABZR87_RS18765: ABZR87_RS18765 - S53 family peptidase, at 562,917 to 564,281 _RS18765 ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109 _RS18770 ABZR87_RS18775: ABZR87_RS18775 - hypothetical protein, at 566,126 to 566,257 _RS18775 ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861 _RS18780 ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632 _RS18785 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 563.484 kb on + strand, within ABZR87_RS18765at 563.511 kb on + strand, within ABZR87_RS18765at 563.511 kb on + strand, within ABZR87_RS18765at 563.512 kb on - strand, within ABZR87_RS18765at 563.598 kb on + strand, within ABZR87_RS18765at 563.598 kb on + strand, within ABZR87_RS18765at 563.598 kb on + strand, within ABZR87_RS18765at 563.599 kb on - strand, within ABZR87_RS18765at 563.599 kb on - strand, within ABZR87_RS18765at 563.757 kb on + strand, within ABZR87_RS18765at 563.757 kb on + strand, within ABZR87_RS18765at 563.757 kb on + strand, within ABZR87_RS18765at 563.758 kb on - strand, within ABZR87_RS18765at 563.758 kb on - strand, within ABZR87_RS18765at 563.772 kb on - strand, within ABZR87_RS18765at 564.145 kb on + strandat 564.226 kb on + strandat 564.227 kb on - strandat 564.227 kb on - strandat 564.387 kb on + strandat 564.387 kb on + strandat 564.387 kb on + strandat 564.388 kb on - strandat 564.388 kb on - strandat 564.388 kb on - strandat 564.388 kb on - strandat 564.388 kb on - strandat 564.388 kb on - strandat 564.513 kb on + strandat 564.514 kb on - strandat 564.514 kb on - strandat 564.661 kb on + strand, within ABZR87_RS18770at 564.662 kb on - strand, within ABZR87_RS18770at 564.793 kb on + strand, within ABZR87_RS18770at 564.793 kb on + strand, within ABZR87_RS18770at 564.794 kb on - strand, within ABZR87_RS18770at 564.794 kb on - strand, within ABZR87_RS18770at 564.794 kb on - strand, within ABZR87_RS18770at 564.794 kb on - strand, within ABZR87_RS18770at 564.795 kb on + strand, within ABZR87_RS18770at 564.970 kb on + strand, within ABZR87_RS18770at 564.970 kb on + strand, within ABZR87_RS18770at 565.111 kb on + strand, within ABZR87_RS18770at 565.112 kb on - strand, within ABZR87_RS18770at 565.112 kb on - strand, within ABZR87_RS18770at 565.112 kb on - strand, within ABZR87_RS18770at 565.141 kb on + strand, within ABZR87_RS18770at 565.141 kb on + strand, within ABZR87_RS18770at 565.141 kb on + strand, within ABZR87_RS18770at 565.141 kb on + strand, within ABZR87_RS18770at 565.141 kb on + strand, within ABZR87_RS18770at 565.142 kb on - strand, within ABZR87_RS18770at 565.142 kb on - strand, within ABZR87_RS18770at 565.142 kb on - strand, within ABZR87_RS18770at 565.142 kb on - strand, within ABZR87_RS18770at 565.142 kb on - strand, within ABZR87_RS18770at 565.204 kb on + strand, within ABZR87_RS18770at 565.337 kb on + strand, within ABZR87_RS18770at 565.338 kb on - strand, within ABZR87_RS18770at 565.355 kb on - strand, within ABZR87_RS18770at 565.418 kb on - strand, within ABZR87_RS18770at 565.540 kb on + strand, within ABZR87_RS18770at 565.540 kb on + strand, within ABZR87_RS18770at 565.541 kb on - strand, within ABZR87_RS18770at 565.639 kb on + strand, within ABZR87_RS18770at 565.660 kb on + strand, within ABZR87_RS18770at 565.660 kb on + strand, within ABZR87_RS18770at 565.661 kb on - strand, within ABZR87_RS18770at 565.661 kb on - strand, within ABZR87_RS18770at 565.661 kb on - strand, within ABZR87_RS18770at 565.801 kb on + strand, within ABZR87_RS18770at 565.801 kb on + strand, within ABZR87_RS18770at 565.801 kb on + strand, within ABZR87_RS18770at 565.801 kb on + strand, within ABZR87_RS18770at 565.801 kb on + strand, within ABZR87_RS18770at 565.802 kb on - strand, within ABZR87_RS18770at 565.802 kb on - strand, within ABZR87_RS18770at 565.802 kb on - strand, within ABZR87_RS18770at 565.802 kb on - strand, within ABZR87_RS18770at 565.871 kb on - strand, within ABZR87_RS18770at 565.873 kb on + strand, within ABZR87_RS18770at 565.873 kb on + strand, within ABZR87_RS18770at 565.874 kb on - strand, within ABZR87_RS18770at 565.894 kb on + strand, within ABZR87_RS18770at 565.895 kb on - strand, within ABZR87_RS18770at 565.969 kb on + strandat 565.969 kb on + strandat 565.970 kb on - strandat 565.970 kb on - strandat 565.970 kb on - strandat 565.970 kb on - strandat 565.990 kb on + strandat 565.990 kb on + strandat 565.990 kb on + strandat 565.990 kb on + strandat 565.990 kb on + strandat 565.990 kb on + strandat 565.991 kb on - strandat 566.041 kb on + strandat 566.041 kb on + strandat 566.041 kb on + strandat 566.041 kb on + strandat 566.041 kb on + strandat 566.041 kb on + strandat 566.042 kb on - strandat 566.042 kb on - strandat 566.139 kb on + strandat 566.142 kb on + strand, within ABZR87_RS18775at 566.142 kb on + strand, within ABZR87_RS18775at 566.142 kb on + strand, within ABZR87_RS18775at 566.143 kb on - strand, within ABZR87_RS18775at 566.151 kb on + strand, within ABZR87_RS18775at 566.151 kb on + strand, within ABZR87_RS18775at 566.151 kb on + strand, within ABZR87_RS18775at 566.151 kb on + strand, within ABZR87_RS18775at 566.152 kb on - strand, within ABZR87_RS18775at 566.152 kb on - strand, within ABZR87_RS18775at 566.152 kb on - strand, within ABZR87_RS18775at 566.152 kb on - strand, within ABZR87_RS18775at 566.152 kb on - strand, within ABZR87_RS18775at 566.154 kb on + strand, within ABZR87_RS18775at 566.154 kb on + strand, within ABZR87_RS18775at 566.155 kb on - strand, within ABZR87_RS18775at 566.155 kb on - strand, within ABZR87_RS18775at 566.155 kb on - strand, within ABZR87_RS18775at 566.169 kb on + strand, within ABZR87_RS18775at 566.169 kb on + strand, within ABZR87_RS18775at 566.169 kb on + strand, within ABZR87_RS18775at 566.170 kb on - strand, within ABZR87_RS18775at 566.170 kb on - strand, within ABZR87_RS18775at 566.170 kb on - strand, within ABZR87_RS18775at 566.173 kb on - strand, within ABZR87_RS18775at 566.302 kb on + strandat 566.303 kb on - strandat 566.328 kb on + strandat 566.329 kb on - strandat 566.337 kb on + strandat 566.337 kb on + strandat 566.338 kb on - strandat 566.338 kb on - strandat 566.338 kb on - strandat 566.412 kb on + strandat 566.423 kb on + strandat 566.424 kb on - strandat 566.501 kb on + strandat 566.501 kb on + strandat 566.502 kb on - strandat 566.502 kb on - strandat 566.512 kb on + strandat 566.512 kb on + strandat 566.512 kb on + strandat 566.513 kb on - strandat 566.513 kb on - strandat 566.542 kb on + strandat 566.542 kb on + strandat 566.542 kb on + strandat 566.599 kb on + strandat 566.599 kb on + strandat 566.599 kb on + strandat 566.600 kb on - strandat 566.600 kb on - strandat 566.601 kb on + strandat 566.601 kb on + strandat 566.601 kb on + strandat 566.601 kb on + strandat 566.602 kb on - strandat 566.602 kb on - strandat 566.602 kb on - strandat 566.602 kb on - strandat 566.602 kb on - strandat 566.602 kb on - strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.603 kb on + strandat 566.604 kb on - strandat 566.604 kb on - strandat 566.604 kb on - strandat 566.698 kb on + strandat 566.698 kb on + strandat 566.699 kb on - strandat 566.699 kb on - strandat 566.699 kb on - strandat 566.859 kb on + strandat 566.859 kb on + strandat 566.859 kb on + strandat 566.860 kb on - strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.028 kb on - strandat 567.028 kb on - strandat 567.028 kb on - strandat 567.108 kb on + strand, within ABZR87_RS18785at 567.108 kb on + strand, within ABZR87_RS18785at 567.109 kb on - strand, within ABZR87_RS18785

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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563,484 + ABZR87_RS18765 0.42 -0.6
563,511 + ABZR87_RS18765 0.44 +0.8
563,511 + ABZR87_RS18765 0.44 +1.6
563,512 - ABZR87_RS18765 0.44 -1.4
563,598 + ABZR87_RS18765 0.50 -3.4
563,598 + ABZR87_RS18765 0.50 -0.8
563,598 + ABZR87_RS18765 0.50 -1.6
563,599 - ABZR87_RS18765 0.50 +0.8
563,599 - ABZR87_RS18765 0.50 -2.3
563,757 + ABZR87_RS18765 0.62 -1.3
563,757 + ABZR87_RS18765 0.62 +1.0
563,757 + ABZR87_RS18765 0.62 +1.5
563,758 - ABZR87_RS18765 0.62 -1.8
563,758 - ABZR87_RS18765 0.62 +1.0
563,772 - ABZR87_RS18765 0.63 +1.7
564,145 + -2.0
564,226 + -3.7
564,227 - +3.0
564,227 - -0.5
564,387 + +1.4
564,387 + -1.2
564,387 + -0.9
564,388 - +0.5
564,388 - +0.2
564,388 - -1.7
564,388 - -0.5
564,388 - +0.8
564,388 - +0.5
564,513 + +1.1
564,514 - +0.2
564,514 - -0.5
564,661 + ABZR87_RS18770 0.16 -0.3
564,662 - ABZR87_RS18770 0.16 +0.2
564,793 + ABZR87_RS18770 0.24 +0.3
564,793 + ABZR87_RS18770 0.24 -2.8
564,794 - ABZR87_RS18770 0.24 +0.5
564,794 - ABZR87_RS18770 0.24 +1.5
564,794 - ABZR87_RS18770 0.24 -0.2
564,794 - ABZR87_RS18770 0.24 -0.3
564,795 + ABZR87_RS18770 0.24 -1.5
564,970 + ABZR87_RS18770 0.34 +1.7
564,970 + ABZR87_RS18770 0.34 +1.1
565,111 + ABZR87_RS18770 0.42 +1.7
565,112 - ABZR87_RS18770 0.42 +3.2
565,112 - ABZR87_RS18770 0.42 +0.5
565,112 - ABZR87_RS18770 0.42 +0.2
565,141 + ABZR87_RS18770 0.44 -1.0
565,141 + ABZR87_RS18770 0.44 -4.5
565,141 + ABZR87_RS18770 0.44 -1.8
565,141 + ABZR87_RS18770 0.44 -1.2
565,141 + ABZR87_RS18770 0.44 +1.1
565,142 - ABZR87_RS18770 0.44 -1.8
565,142 - ABZR87_RS18770 0.44 +2.9
565,142 - ABZR87_RS18770 0.44 -0.1
565,142 - ABZR87_RS18770 0.44 -3.1
565,142 - ABZR87_RS18770 0.44 +2.2
565,204 + ABZR87_RS18770 0.48 +1.3
565,337 + ABZR87_RS18770 0.55 -0.1
565,338 - ABZR87_RS18770 0.55 +0.5
565,355 - ABZR87_RS18770 0.56 +1.3
565,418 - ABZR87_RS18770 0.60 -3.3
565,540 + ABZR87_RS18770 0.67 +1.7
565,540 + ABZR87_RS18770 0.67 -0.1
565,541 - ABZR87_RS18770 0.67 +0.8
565,639 + ABZR87_RS18770 0.73 -0.4
565,660 + ABZR87_RS18770 0.74 +0.5
565,660 + ABZR87_RS18770 0.74 -2.1
565,661 - ABZR87_RS18770 0.74 -1.6
565,661 - ABZR87_RS18770 0.74 +0.7
565,661 - ABZR87_RS18770 0.74 +0.1
565,801 + ABZR87_RS18770 0.82 +2.0
565,801 + ABZR87_RS18770 0.82 +0.4
565,801 + ABZR87_RS18770 0.82 +0.1
565,801 + ABZR87_RS18770 0.82 +0.6
565,801 + ABZR87_RS18770 0.82 +0.0
565,802 - ABZR87_RS18770 0.82 -2.0
565,802 - ABZR87_RS18770 0.82 +0.8
565,802 - ABZR87_RS18770 0.82 -0.0
565,802 - ABZR87_RS18770 0.82 +0.3
565,871 - ABZR87_RS18770 0.86 +0.5
565,873 + ABZR87_RS18770 0.86 -1.9
565,873 + ABZR87_RS18770 0.86 -0.2
565,874 - ABZR87_RS18770 0.86 -3.3
565,894 + ABZR87_RS18770 0.88 -2.8
565,895 - ABZR87_RS18770 0.88 +0.7
565,969 + +0.8
565,969 + -0.2
565,970 - +1.5
565,970 - -0.2
565,970 - +1.5
565,970 - +2.6
565,990 + -0.1
565,990 + -1.5
565,990 + +1.1
565,990 + +1.6
565,990 + -2.5
565,990 + -3.3
565,991 - +0.7
566,041 + -0.6
566,041 + +0.9
566,041 + +0.7
566,041 + -0.8
566,041 + -0.9
566,041 + -2.4
566,042 - +2.4
566,042 - +1.1
566,139 + +1.8
566,142 + ABZR87_RS18775 0.12 -1.1
566,142 + ABZR87_RS18775 0.12 -1.5
566,142 + ABZR87_RS18775 0.12 +0.1
566,143 - ABZR87_RS18775 0.13 -1.5
566,151 + ABZR87_RS18775 0.19 -3.5
566,151 + ABZR87_RS18775 0.19 -2.8
566,151 + ABZR87_RS18775 0.19 -2.6
566,151 + ABZR87_RS18775 0.19 -2.1
566,152 - ABZR87_RS18775 0.20 +1.1
566,152 - ABZR87_RS18775 0.20 -2.7
566,152 - ABZR87_RS18775 0.20 -2.5
566,152 - ABZR87_RS18775 0.20 +0.6
566,152 - ABZR87_RS18775 0.20 -0.1
566,154 + ABZR87_RS18775 0.21 -3.0
566,154 + ABZR87_RS18775 0.21 -3.3
566,155 - ABZR87_RS18775 0.22 -3.0
566,155 - ABZR87_RS18775 0.22 +0.4
566,155 - ABZR87_RS18775 0.22 -3.2
566,169 + ABZR87_RS18775 0.33 +0.9
566,169 + ABZR87_RS18775 0.33 -2.3
566,169 + ABZR87_RS18775 0.33 -2.8
566,170 - ABZR87_RS18775 0.33 -2.8
566,170 - ABZR87_RS18775 0.33 +0.5
566,170 - ABZR87_RS18775 0.33 -1.0
566,173 - ABZR87_RS18775 0.36 -4.0
566,302 + +1.5
566,303 - +0.1
566,328 + -2.9
566,329 - +0.0
566,337 + -0.4
566,337 + -0.4
566,338 - -3.2
566,338 - -0.3
566,338 - +0.4
566,412 + +0.4
566,423 + +0.7
566,424 - +0.7
566,501 + +0.3
566,501 + -3.5
566,502 - -2.2
566,502 - -1.2
566,512 + +1.1
566,512 + -0.1
566,512 + +1.4
566,513 - -1.4
566,513 - +1.3
566,542 + -2.0
566,542 + -2.2
566,542 + -2.5
566,599 + -2.3
566,599 + -1.9
566,599 + +2.2
566,600 - +0.2
566,600 - +2.8
566,601 + +0.2
566,601 + +0.1
566,601 + -3.5
566,601 + -0.9
566,602 - -2.9
566,602 - +1.9
566,602 - +0.1
566,602 - -0.4
566,602 - +1.9
566,602 - +1.0
566,603 + -0.5
566,603 + -1.7
566,603 + +1.0
566,603 + -1.6
566,603 + -1.2
566,603 + -0.6
566,603 + +1.3
566,604 - -3.2
566,604 - +0.0
566,604 - -1.3
566,698 + -3.2
566,698 + +0.9
566,699 - -3.1
566,699 - +0.3
566,699 - -2.2
566,859 + +2.5
566,859 + -0.6
566,859 + -1.9
566,860 - -1.6
567,027 + -4.1
567,027 + -1.3
567,027 + -2.2
567,027 + +0.2
567,027 + -0.6
567,027 + +0.1
567,028 - -3.0
567,028 - -0.6
567,028 - -2.2
567,108 + ABZR87_RS18785 0.16 -0.8
567,108 + ABZR87_RS18785 0.16 -1.2
567,109 - ABZR87_RS18785 0.16 +1.0

Or see this region's nucleotide sequence