Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18670

Experiment: soil EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18665 and ABZR87_RS18670 are separated by 33 nucleotidesABZR87_RS18670 and ABZR87_RS18675 are separated by 34 nucleotidesABZR87_RS18675 and ABZR87_RS18680 overlap by 4 nucleotides ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944 _RS18665 ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096 _RS18670 ABZR87_RS18675: ABZR87_RS18675 - HAD family phosphatase, at 543,131 to 543,847 _RS18675 ABZR87_RS18680: ABZR87_RS18680 - carbohydrate ABC transporter permease, at 543,844 to 544,665 _RS18680 Position (kb) 541 542 543 544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 541.001 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.517 kb on + strand, within ABZR87_RS18665at 541.518 kb on - strand, within ABZR87_RS18665at 541.518 kb on - strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.596 kb on - strand, within ABZR87_RS18665at 541.596 kb on - strand, within ABZR87_RS18665at 541.598 kb on + strand, within ABZR87_RS18665at 541.718 kb on + strand, within ABZR87_RS18665at 541.718 kb on + strand, within ABZR87_RS18665at 541.719 kb on - strand, within ABZR87_RS18665at 541.758 kb on - strand, within ABZR87_RS18665at 541.826 kb on - strandat 541.868 kb on + strandat 541.868 kb on + strandat 541.868 kb on + strandat 541.869 kb on - strandat 542.168 kb on + strand, within ABZR87_RS18670at 542.168 kb on + strand, within ABZR87_RS18670at 542.169 kb on - strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.433 kb on - strand, within ABZR87_RS18670at 542.433 kb on - strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.755 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.846 kb on + strand, within ABZR87_RS18670at 542.884 kb on + strand, within ABZR87_RS18670at 543.059 kb on + strandat 543.060 kb on - strandat 543.188 kb on - strandat 543.266 kb on + strand, within ABZR87_RS18675at 543.266 kb on + strand, within ABZR87_RS18675at 543.267 kb on - strand, within ABZR87_RS18675at 543.370 kb on - strand, within ABZR87_RS18675at 543.406 kb on - strand, within ABZR87_RS18675at 543.412 kb on + strand, within ABZR87_RS18675at 543.412 kb on + strand, within ABZR87_RS18675at 543.413 kb on - strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.414 kb on + strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.415 kb on - strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.433 kb on + strand, within ABZR87_RS18675at 543.434 kb on - strand, within ABZR87_RS18675at 543.434 kb on - strand, within ABZR87_RS18675at 543.717 kb on - strand, within ABZR87_RS18675at 543.717 kb on - strand, within ABZR87_RS18675at 543.825 kb on + strandat 543.977 kb on + strand, within ABZR87_RS18680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
remove
541,001 + ABZR87_RS18665 0.33 +0.3
541,092 + ABZR87_RS18665 0.40 +2.3
541,092 + ABZR87_RS18665 0.40 -2.5
541,092 + ABZR87_RS18665 0.40 -0.5
541,092 + ABZR87_RS18665 0.40 +0.1
541,092 + ABZR87_RS18665 0.40 -1.5
541,093 - ABZR87_RS18665 0.40 +2.4
541,093 - ABZR87_RS18665 0.40 +0.1
541,093 - ABZR87_RS18665 0.40 +1.3
541,093 - ABZR87_RS18665 0.40 -1.2
541,093 - ABZR87_RS18665 0.40 -1.5
541,093 - ABZR87_RS18665 0.40 +0.1
541,517 + ABZR87_RS18665 0.70 -0.4
541,518 - ABZR87_RS18665 0.70 +0.8
541,518 - ABZR87_RS18665 0.70 -4.0
541,595 + ABZR87_RS18665 0.75 +1.6
541,595 + ABZR87_RS18665 0.75 +0.4
541,595 + ABZR87_RS18665 0.75 -0.9
541,595 + ABZR87_RS18665 0.75 +0.0
541,596 - ABZR87_RS18665 0.75 +0.4
541,596 - ABZR87_RS18665 0.75 -1.1
541,598 + ABZR87_RS18665 0.76 +1.2
541,718 + ABZR87_RS18665 0.84 +0.1
541,718 + ABZR87_RS18665 0.84 -0.1
541,719 - ABZR87_RS18665 0.84 -1.7
541,758 - ABZR87_RS18665 0.87 +1.8
541,826 - +0.9
541,868 + -0.2
541,868 + +0.3
541,868 + +0.1
541,869 - -1.3
542,168 + ABZR87_RS18670 0.17 +1.9
542,168 + ABZR87_RS18670 0.17 -0.3
542,169 - ABZR87_RS18670 0.17 +1.2
542,432 + ABZR87_RS18670 0.41 -2.9
542,432 + ABZR87_RS18670 0.41 -2.8
542,432 + ABZR87_RS18670 0.41 -1.6
542,433 - ABZR87_RS18670 0.41 -1.0
542,433 - ABZR87_RS18670 0.41 +3.1
542,531 + ABZR87_RS18670 0.49 +1.8
542,531 + ABZR87_RS18670 0.49 -0.0
542,531 + ABZR87_RS18670 0.49 -0.9
542,531 + ABZR87_RS18670 0.49 +1.3
542,532 - ABZR87_RS18670 0.50 -1.5
542,532 - ABZR87_RS18670 0.50 +2.2
542,532 - ABZR87_RS18670 0.50 -0.9
542,755 + ABZR87_RS18670 0.69 -3.1
542,837 + ABZR87_RS18670 0.77 -3.0
542,837 + ABZR87_RS18670 0.77 -2.0
542,837 + ABZR87_RS18670 0.77 +0.9
542,846 + ABZR87_RS18670 0.78 -0.5
542,884 + ABZR87_RS18670 0.81 +0.5
543,059 + +1.9
543,060 - -0.8
543,188 - +0.6
543,266 + ABZR87_RS18675 0.19 +0.0
543,266 + ABZR87_RS18675 0.19 +0.8
543,267 - ABZR87_RS18675 0.19 -3.4
543,370 - ABZR87_RS18675 0.33 +0.9
543,406 - ABZR87_RS18675 0.38 -3.2
543,412 + ABZR87_RS18675 0.39 -1.5
543,412 + ABZR87_RS18675 0.39 -1.5
543,413 - ABZR87_RS18675 0.39 -1.6
543,414 + ABZR87_RS18675 0.39 +2.8
543,414 + ABZR87_RS18675 0.39 -0.1
543,414 + ABZR87_RS18675 0.39 -2.3
543,414 + ABZR87_RS18675 0.39 +0.4
543,414 + ABZR87_RS18675 0.39 -1.2
543,414 + ABZR87_RS18675 0.39 +1.0
543,414 + ABZR87_RS18675 0.39 -2.8
543,414 + ABZR87_RS18675 0.39 -1.0
543,414 + ABZR87_RS18675 0.39 +2.3
543,415 - ABZR87_RS18675 0.40 -1.1
543,415 - ABZR87_RS18675 0.40 +0.2
543,415 - ABZR87_RS18675 0.40 -0.3
543,415 - ABZR87_RS18675 0.40 +1.6
543,415 - ABZR87_RS18675 0.40 -0.9
543,433 + ABZR87_RS18675 0.42 +0.7
543,433 + ABZR87_RS18675 0.42 +0.6
543,433 + ABZR87_RS18675 0.42 +0.6
543,434 - ABZR87_RS18675 0.42 -0.6
543,434 - ABZR87_RS18675 0.42 +1.7
543,717 - ABZR87_RS18675 0.82 +1.6
543,717 - ABZR87_RS18675 0.82 +0.6
543,825 + +0.1
543,977 + ABZR87_RS18680 0.16 -3.0

Or see this region's nucleotide sequence