Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18495

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18485 and ABZR87_RS18490 are separated by 13 nucleotidesABZR87_RS18490 and ABZR87_RS18495 are separated by 125 nucleotidesABZR87_RS18495 and ABZR87_RS18500 are separated by 27 nucleotides ABZR87_RS18485: ABZR87_RS18485 - GGDEF domain-containing protein, at 505,034 to 506,215 _RS18485 ABZR87_RS18490: ABZR87_RS18490 - LysR family transcriptional regulator, at 506,229 to 507,086 _RS18490 ABZR87_RS18495: ABZR87_RS18495 - multidrug transporter subunit MdtD, at 507,212 to 508,630 _RS18495 ABZR87_RS18500: ABZR87_RS18500 - AraC family transcriptional regulator, at 508,658 to 509,713 _RS18500 Position (kb) 507 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 506.213 kb on + strandat 506.409 kb on - strand, within ABZR87_RS18490at 506.438 kb on + strand, within ABZR87_RS18490at 506.438 kb on + strand, within ABZR87_RS18490at 506.438 kb on + strand, within ABZR87_RS18490at 506.438 kb on + strand, within ABZR87_RS18490at 506.439 kb on - strand, within ABZR87_RS18490at 506.692 kb on + strand, within ABZR87_RS18490at 506.692 kb on + strand, within ABZR87_RS18490at 506.693 kb on - strand, within ABZR87_RS18490at 506.693 kb on - strand, within ABZR87_RS18490at 507.029 kb on + strandat 507.029 kb on + strandat 507.029 kb on + strandat 507.035 kb on + strandat 507.036 kb on - strandat 507.036 kb on - strandat 507.130 kb on - strandat 507.159 kb on + strandat 507.393 kb on - strand, within ABZR87_RS18495at 507.393 kb on - strand, within ABZR87_RS18495at 507.464 kb on + strand, within ABZR87_RS18495at 507.465 kb on - strand, within ABZR87_RS18495at 507.465 kb on - strand, within ABZR87_RS18495at 507.520 kb on + strand, within ABZR87_RS18495at 507.520 kb on + strand, within ABZR87_RS18495at 507.521 kb on - strand, within ABZR87_RS18495at 507.521 kb on - strand, within ABZR87_RS18495at 507.611 kb on - strand, within ABZR87_RS18495at 507.626 kb on + strand, within ABZR87_RS18495at 507.627 kb on - strand, within ABZR87_RS18495at 507.627 kb on - strand, within ABZR87_RS18495at 507.627 kb on - strand, within ABZR87_RS18495at 507.705 kb on + strand, within ABZR87_RS18495at 507.705 kb on + strand, within ABZR87_RS18495at 507.705 kb on + strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.946 kb on + strand, within ABZR87_RS18495at 507.946 kb on + strand, within ABZR87_RS18495at 507.947 kb on - strand, within ABZR87_RS18495at 508.131 kb on + strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.200 kb on - strand, within ABZR87_RS18495at 508.502 kb on + strandat 508.602 kb on + strandat 508.603 kb on - strandat 508.816 kb on - strand, within ABZR87_RS18500at 508.821 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.969 kb on - strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.050 kb on - strand, within ABZR87_RS18500at 509.301 kb on - strand, within ABZR87_RS18500at 509.361 kb on + strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.486 kb on - strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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506,213 + +0.6
506,409 - ABZR87_RS18490 0.21 +0.3
506,438 + ABZR87_RS18490 0.24 -0.5
506,438 + ABZR87_RS18490 0.24 +1.0
506,438 + ABZR87_RS18490 0.24 -0.5
506,438 + ABZR87_RS18490 0.24 -0.2
506,439 - ABZR87_RS18490 0.24 -1.0
506,692 + ABZR87_RS18490 0.54 -1.3
506,692 + ABZR87_RS18490 0.54 -2.6
506,693 - ABZR87_RS18490 0.54 -2.3
506,693 - ABZR87_RS18490 0.54 -1.2
507,029 + +0.5
507,029 + +1.1
507,029 + -1.4
507,035 + -1.1
507,036 - -1.5
507,036 - -4.0
507,130 - -2.3
507,159 + -2.7
507,393 - ABZR87_RS18495 0.13 -2.0
507,393 - ABZR87_RS18495 0.13 -0.7
507,464 + ABZR87_RS18495 0.18 +2.6
507,465 - ABZR87_RS18495 0.18 -0.2
507,465 - ABZR87_RS18495 0.18 +1.0
507,520 + ABZR87_RS18495 0.22 +1.1
507,520 + ABZR87_RS18495 0.22 -2.5
507,521 - ABZR87_RS18495 0.22 +1.0
507,521 - ABZR87_RS18495 0.22 -2.4
507,611 - ABZR87_RS18495 0.28 +1.5
507,626 + ABZR87_RS18495 0.29 -0.6
507,627 - ABZR87_RS18495 0.29 +1.6
507,627 - ABZR87_RS18495 0.29 +2.2
507,627 - ABZR87_RS18495 0.29 +0.5
507,705 + ABZR87_RS18495 0.35 -0.0
507,705 + ABZR87_RS18495 0.35 -1.0
507,705 + ABZR87_RS18495 0.35 +2.2
507,706 - ABZR87_RS18495 0.35 -1.8
507,706 - ABZR87_RS18495 0.35 -0.4
507,706 - ABZR87_RS18495 0.35 -1.2
507,945 - ABZR87_RS18495 0.52 -0.0
507,945 - ABZR87_RS18495 0.52 -0.0
507,945 - ABZR87_RS18495 0.52 -0.4
507,945 - ABZR87_RS18495 0.52 -2.3
507,945 - ABZR87_RS18495 0.52 +2.2
507,945 - ABZR87_RS18495 0.52 +0.8
507,946 + ABZR87_RS18495 0.52 -0.4
507,946 + ABZR87_RS18495 0.52 +2.5
507,947 - ABZR87_RS18495 0.52 -2.0
508,131 + ABZR87_RS18495 0.65 -3.5
508,132 - ABZR87_RS18495 0.65 -0.2
508,132 - ABZR87_RS18495 0.65 -0.8
508,132 - ABZR87_RS18495 0.65 -0.6
508,200 - ABZR87_RS18495 0.70 +0.0
508,502 + -0.3
508,602 + +1.0
508,603 - +4.3
508,816 - ABZR87_RS18500 0.15 -0.4
508,821 + ABZR87_RS18500 0.15 +0.1
508,902 + ABZR87_RS18500 0.23 +0.6
508,902 + ABZR87_RS18500 0.23 -2.4
508,903 - ABZR87_RS18500 0.23 -3.0
508,903 - ABZR87_RS18500 0.23 -0.3
508,903 - ABZR87_RS18500 0.23 +1.6
508,903 - ABZR87_RS18500 0.23 -0.3
508,968 + ABZR87_RS18500 0.29 -1.5
508,968 + ABZR87_RS18500 0.29 -3.1
508,968 + ABZR87_RS18500 0.29 +2.6
508,969 - ABZR87_RS18500 0.29 -0.1
509,049 + ABZR87_RS18500 0.37 -0.8
509,049 + ABZR87_RS18500 0.37 +1.5
509,049 + ABZR87_RS18500 0.37 -1.0
509,050 - ABZR87_RS18500 0.37 -1.3
509,301 - ABZR87_RS18500 0.61 -1.7
509,361 + ABZR87_RS18500 0.67 +0.4
509,362 - ABZR87_RS18500 0.67 -0.5
509,362 - ABZR87_RS18500 0.67 +0.2
509,417 - ABZR87_RS18500 0.72 -3.4
509,417 - ABZR87_RS18500 0.72 -2.1
509,486 - ABZR87_RS18500 0.78 +0.3
509,499 + ABZR87_RS18500 0.80 -3.2
509,499 + ABZR87_RS18500 0.80 -1.4
509,499 + ABZR87_RS18500 0.80 -0.3
509,500 - ABZR87_RS18500 0.80 -1.0
509,500 - ABZR87_RS18500 0.80 +0.3

Or see this region's nucleotide sequence