Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18340 and ABZR87_RS18345 are separated by 278 nucleotides ABZR87_RS18345 and ABZR87_RS18350 are separated by 99 nucleotides
ABZR87_RS18340: ABZR87_RS18340 - helix-turn-helix domain-containing protein, at 480,783 to 481,718
_RS18340
ABZR87_RS18345: ABZR87_RS18345 - ABC transporter substrate-binding protein, at 481,997 to 482,983
_RS18345
ABZR87_RS18350: ABZR87_RS18350 - sugar ABC transporter ATP-binding protein, at 483,083 to 484,672
_RS18350
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.056 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.510 kb on - strand, within ABZR87_RS18340 at 481.815 kb on - strand at 481.834 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.922 kb on + strand at 481.923 kb on - strand at 481.923 kb on - strand at 481.923 kb on - strand at 481.960 kb on - strand at 482.034 kb on + strand at 482.034 kb on + strand at 482.035 kb on - strand at 482.035 kb on - strand at 482.264 kb on + strand, within ABZR87_RS18345 at 482.265 kb on - strand, within ABZR87_RS18345 at 482.405 kb on + strand, within ABZR87_RS18345 at 482.406 kb on - strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.687 kb on + strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345 at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.059 kb on - strand at 483.362 kb on - strand, within ABZR87_RS18350 at 483.374 kb on + strand, within ABZR87_RS18350 at 483.374 kb on + strand, within ABZR87_RS18350 at 483.375 kb on - strand, within ABZR87_RS18350 at 483.375 kb on - strand, within ABZR87_RS18350 at 483.523 kb on + strand, within ABZR87_RS18350 at 483.524 kb on - strand, within ABZR87_RS18350 at 483.731 kb on + strand, within ABZR87_RS18350 at 483.732 kb on - strand, within ABZR87_RS18350 at 483.752 kb on - strand, within ABZR87_RS18350
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 481,056 + ABZR87_RS18340 0.29 +1.7 481,509 + ABZR87_RS18340 0.78 -2.7 481,509 + ABZR87_RS18340 0.78 +2.0 481,510 - ABZR87_RS18340 0.78 -2.7 481,815 - -3.1 481,834 - +0.2 481,858 - -0.0 481,858 - +1.1 481,858 - -0.9 481,858 - +0.6 481,922 + +0.3 481,923 - +1.2 481,923 - +2.1 481,923 - +0.7 481,960 - -3.7 482,034 + +0.7 482,034 + -3.7 482,035 - +1.3 482,035 - -0.4 482,264 + ABZR87_RS18345 0.27 -0.3 482,265 - ABZR87_RS18345 0.27 +0.2 482,405 + ABZR87_RS18345 0.41 -2.2 482,406 - ABZR87_RS18345 0.41 -0.4 482,585 + ABZR87_RS18345 0.60 +1.3 482,585 + ABZR87_RS18345 0.60 +0.7 482,585 + ABZR87_RS18345 0.60 +1.5 482,687 + ABZR87_RS18345 0.70 -0.7 482,688 - ABZR87_RS18345 0.70 +0.7 482,688 - ABZR87_RS18345 0.70 -2.7 482,978 + +0.1 482,978 + +1.3 482,978 + -1.5 482,978 + +0.7 482,978 + +1.6 482,978 + -0.4 483,058 + +1.2 483,058 + -0.7 483,058 + +0.2 483,058 + +1.9 483,059 - +0.4 483,362 - ABZR87_RS18350 0.18 +0.1 483,374 + ABZR87_RS18350 0.18 +2.0 483,374 + ABZR87_RS18350 0.18 -1.6 483,375 - ABZR87_RS18350 0.18 -0.5 483,375 - ABZR87_RS18350 0.18 +0.3 483,523 + ABZR87_RS18350 0.28 -1.0 483,524 - ABZR87_RS18350 0.28 -2.1 483,731 + ABZR87_RS18350 0.41 -2.7 483,732 - ABZR87_RS18350 0.41 -1.0 483,752 - ABZR87_RS18350 0.42 -0.7
Or see this region's nucleotide sequence