Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18290 and ABZR87_RS18295 are separated by 72 nucleotides ABZR87_RS18295 and ABZR87_RS18300 are separated by 177 nucleotides ABZR87_RS18300 and ABZR87_RS18305 are separated by 23 nucleotides ABZR87_RS18305 and ABZR87_RS18310 are separated by 72 nucleotides
ABZR87_RS18290: ABZR87_RS18290 - glycine zipper 2TM domain-containing protein, at 473,022 to 473,204
_RS18290
ABZR87_RS18295: ABZR87_RS18295 - YggT family protein, at 473,277 to 473,837
_RS18295
ABZR87_RS18300: ABZR87_RS18300 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 474,015 to 474,578
_RS18300
ABZR87_RS18305: ABZR87_RS18305 - substrate-binding domain-containing protein, at 474,602 to 475,384
_RS18305
ABZR87_RS18310: ABZR87_RS18310 - sulfonate ABC transporter substrate-binding protein, at 475,457 to 476,449
_RS18310
Position (kb) 474
475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 473.023 kb on + strand at 473.023 kb on + strand at 473.024 kb on - strand at 473.024 kb on - strand at 473.024 kb on - strand at 473.070 kb on + strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.178 kb on + strand, within ABZR87_RS18290 at 473.179 kb on - strand, within ABZR87_RS18290 at 473.179 kb on - strand, within ABZR87_RS18290 at 473.245 kb on + strand at 473.246 kb on - strand at 473.246 kb on - strand at 473.605 kb on + strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.623 kb on + strand, within ABZR87_RS18295 at 473.624 kb on - strand, within ABZR87_RS18295 at 473.652 kb on - strand, within ABZR87_RS18295 at 473.653 kb on + strand, within ABZR87_RS18295 at 473.653 kb on + strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.826 kb on - strand at 473.971 kb on + strand at 474.306 kb on + strand, within ABZR87_RS18300 at 474.399 kb on + strand, within ABZR87_RS18300 at 474.441 kb on + strand, within ABZR87_RS18300 at 474.441 kb on + strand, within ABZR87_RS18300 at 474.533 kb on + strand at 474.533 kb on + strand at 474.533 kb on + strand at 474.533 kb on + strand at 474.533 kb on + strand at 474.534 kb on - strand at 474.534 kb on - strand at 474.603 kb on + strand at 474.729 kb on + strand, within ABZR87_RS18305 at 474.729 kb on + strand, within ABZR87_RS18305 at 474.730 kb on - strand, within ABZR87_RS18305 at 474.738 kb on + strand, within ABZR87_RS18305 at 474.739 kb on - strand, within ABZR87_RS18305 at 474.771 kb on + strand, within ABZR87_RS18305 at 474.771 kb on + strand, within ABZR87_RS18305 at 474.772 kb on - strand, within ABZR87_RS18305 at 474.927 kb on - strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.930 kb on + strand, within ABZR87_RS18305 at 474.966 kb on + strand, within ABZR87_RS18305 at 474.966 kb on + strand, within ABZR87_RS18305 at 474.966 kb on + strand, within ABZR87_RS18305 at 474.967 kb on - strand, within ABZR87_RS18305 at 474.967 kb on - strand, within ABZR87_RS18305 at 475.021 kb on + strand, within ABZR87_RS18305 at 475.022 kb on - strand, within ABZR87_RS18305 at 475.099 kb on - strand, within ABZR87_RS18305 at 475.399 kb on + strand at 475.400 kb on - strand at 475.400 kb on - strand at 475.419 kb on + strand at 475.419 kb on + strand at 475.419 kb on + strand at 475.420 kb on - strand at 475.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 473,023 + +2.7 473,023 + +0.9 473,024 - -3.1 473,024 - -3.3 473,024 - +0.2 473,070 + ABZR87_RS18290 0.26 -0.0 473,071 - ABZR87_RS18290 0.27 -0.8 473,071 - ABZR87_RS18290 0.27 -2.2 473,071 - ABZR87_RS18290 0.27 +0.0 473,178 + ABZR87_RS18290 0.85 +0.1 473,179 - ABZR87_RS18290 0.86 +0.9 473,179 - ABZR87_RS18290 0.86 +1.8 473,245 + +0.1 473,246 - +0.5 473,246 - +0.2 473,605 + ABZR87_RS18295 0.58 -2.4 473,606 - ABZR87_RS18295 0.59 +0.6 473,606 - ABZR87_RS18295 0.59 -2.7 473,606 - ABZR87_RS18295 0.59 +1.3 473,623 + ABZR87_RS18295 0.62 +0.5 473,624 - ABZR87_RS18295 0.62 -0.1 473,652 - ABZR87_RS18295 0.67 -0.1 473,653 + ABZR87_RS18295 0.67 +1.6 473,653 + ABZR87_RS18295 0.67 +1.0 473,654 - ABZR87_RS18295 0.67 +2.7 473,654 - ABZR87_RS18295 0.67 -1.1 473,654 - ABZR87_RS18295 0.67 -3.8 473,654 - ABZR87_RS18295 0.67 -0.2 473,654 - ABZR87_RS18295 0.67 -1.0 473,826 - -2.0 473,971 + -0.5 474,306 + ABZR87_RS18300 0.52 -3.3 474,399 + ABZR87_RS18300 0.68 -3.7 474,441 + ABZR87_RS18300 0.76 -4.0 474,441 + ABZR87_RS18300 0.76 -1.7 474,533 + +0.1 474,533 + +0.3 474,533 + +0.2 474,533 + -1.6 474,533 + -1.8 474,534 - -0.4 474,534 - -1.8 474,603 + -0.7 474,729 + ABZR87_RS18305 0.16 +1.4 474,729 + ABZR87_RS18305 0.16 +0.1 474,730 - ABZR87_RS18305 0.16 -0.6 474,738 + ABZR87_RS18305 0.17 +0.4 474,739 - ABZR87_RS18305 0.17 -2.4 474,771 + ABZR87_RS18305 0.22 -0.2 474,771 + ABZR87_RS18305 0.22 +0.4 474,772 - ABZR87_RS18305 0.22 -0.5 474,927 - ABZR87_RS18305 0.42 +0.1 474,930 + ABZR87_RS18305 0.42 +3.1 474,930 + ABZR87_RS18305 0.42 -0.1 474,930 + ABZR87_RS18305 0.42 -0.8 474,930 + ABZR87_RS18305 0.42 -1.1 474,930 + ABZR87_RS18305 0.42 -1.4 474,930 + ABZR87_RS18305 0.42 +0.2 474,966 + ABZR87_RS18305 0.46 -0.4 474,966 + ABZR87_RS18305 0.46 -1.9 474,966 + ABZR87_RS18305 0.46 -0.0 474,967 - ABZR87_RS18305 0.47 -2.3 474,967 - ABZR87_RS18305 0.47 +1.9 475,021 + ABZR87_RS18305 0.54 +0.6 475,022 - ABZR87_RS18305 0.54 +1.3 475,099 - ABZR87_RS18305 0.63 -3.1 475,399 + -1.7 475,400 - -2.6 475,400 - -0.1 475,419 + -1.3 475,419 + -0.1 475,419 + +3.2 475,420 - +0.5 475,420 - +0.0
Or see this region's nucleotide sequence