Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18065 and ABZR87_RS18070 are separated by 296 nucleotides ABZR87_RS18070 and ABZR87_RS18075 overlap by 4 nucleotides ABZR87_RS18075 and ABZR87_RS18080 overlap by 4 nucleotides
ABZR87_RS18065: ABZR87_RS18065 - LuxR family transcriptional regulator, at 418,698 to 419,600
_RS18065
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
ABZR87_RS18075: ABZR87_RS18075 - type III secretion system export apparatus subunit SctT, at 420,937 to 421,737
_RS18075
ABZR87_RS18080: ABZR87_RS18080 - hypothetical protein, at 421,734 to 422,246
_RS18080
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.329 kb on + strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.796 kb on + strand at 419.797 kb on - strand at 420.145 kb on - strand, within ABZR87_RS18070 at 420.156 kb on + strand, within ABZR87_RS18070 at 420.157 kb on - strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.838 kb on + strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.854 kb on + strand at 420.855 kb on - strand at 421.022 kb on + strand, within ABZR87_RS18075 at 421.022 kb on + strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.440 kb on - strand, within ABZR87_RS18075
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 419,272 + ABZR87_RS18065 0.64 +0.8 419,272 + ABZR87_RS18065 0.64 -0.6 419,273 - ABZR87_RS18065 0.64 -0.5 419,273 - ABZR87_RS18065 0.64 +2.7 419,273 - ABZR87_RS18065 0.64 -2.4 419,329 + ABZR87_RS18065 0.70 -3.0 419,330 - ABZR87_RS18065 0.70 -1.8 419,330 - ABZR87_RS18065 0.70 +1.4 419,330 - ABZR87_RS18065 0.70 -2.5 419,796 + +3.7 419,797 - -2.0 420,145 - ABZR87_RS18070 0.24 -2.3 420,156 + ABZR87_RS18070 0.25 -0.5 420,157 - ABZR87_RS18070 0.25 +1.6 420,312 + ABZR87_RS18070 0.40 +1.3 420,312 + ABZR87_RS18070 0.40 -0.8 420,312 + ABZR87_RS18070 0.40 -0.3 420,313 - ABZR87_RS18070 0.40 -1.2 420,313 - ABZR87_RS18070 0.40 -1.8 420,334 - ABZR87_RS18070 0.42 +2.0 420,334 - ABZR87_RS18070 0.42 +1.5 420,334 - ABZR87_RS18070 0.42 +0.7 420,350 + ABZR87_RS18070 0.43 -1.6 420,350 + ABZR87_RS18070 0.43 -0.1 420,838 + +1.0 420,839 - +0.6 420,839 - +0.3 420,854 + +1.7 420,855 - -3.3 421,022 + ABZR87_RS18075 0.11 +0.8 421,022 + ABZR87_RS18075 0.11 -0.1 421,023 - ABZR87_RS18075 0.11 +0.1 421,023 - ABZR87_RS18075 0.11 -3.4 421,023 - ABZR87_RS18075 0.11 +0.9 421,023 - ABZR87_RS18075 0.11 -2.7 421,440 - ABZR87_RS18075 0.63 +2.3
Or see this region's nucleotide sequence