Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17975 and ABZR87_RS17980 are separated by 103 nucleotides ABZR87_RS17980 and ABZR87_RS17985 are separated by 89 nucleotides ABZR87_RS17985 and ABZR87_RS17990 are separated by 139 nucleotides
ABZR87_RS17975: ABZR87_RS17975 - methyl-accepting chemotaxis protein, at 387,766 to 389,688
_RS17975
ABZR87_RS17980: ABZR87_RS17980 - CheR family methyltransferase, at 389,792 to 390,670
_RS17980
ABZR87_RS17985: ABZR87_RS17985 - chemoreceptor glutamine deamidase CheD, at 390,760 to 391,377
_RS17985
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
Position (kb) 389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.063 kb on + strand, within ABZR87_RS17975 at 389.776 kb on + strand at 389.776 kb on + strand at 389.784 kb on - strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.899 kb on + strand, within ABZR87_RS17980 at 389.899 kb on + strand, within ABZR87_RS17980 at 389.900 kb on - strand, within ABZR87_RS17980 at 389.933 kb on + strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.987 kb on + strand, within ABZR87_RS17980 at 390.037 kb on + strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.253 kb on + strand, within ABZR87_RS17980 at 390.254 kb on - strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.288 kb on - strand, within ABZR87_RS17980 at 390.335 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.488 kb on + strand, within ABZR87_RS17980 at 390.489 kb on - strand, within ABZR87_RS17980 at 390.626 kb on + strand at 390.799 kb on + strand at 390.800 kb on - strand at 390.800 kb on - strand at 390.803 kb on - strand at 390.803 kb on - strand at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.851 kb on - strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.119 kb on + strand, within ABZR87_RS17985 at 391.120 kb on - strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.432 kb on + strand at 391.433 kb on - strand at 391.433 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 389,063 + ABZR87_RS17975 0.67 +0.5 389,063 + ABZR87_RS17975 0.67 -0.6 389,063 + ABZR87_RS17975 0.67 -4.6 389,063 + ABZR87_RS17975 0.67 +0.4 389,063 + ABZR87_RS17975 0.67 -1.6 389,776 + +0.5 389,776 + -2.1 389,784 - -0.8 389,787 + +0.1 389,787 + -2.6 389,787 + -1.4 389,787 + -1.8 389,787 + +2.3 389,787 + -2.5 389,787 + -0.5 389,787 + +1.2 389,787 + -0.2 389,787 + +1.3 389,787 + +0.9 389,787 + +1.8 389,788 - -4.4 389,788 - +1.3 389,788 - +1.8 389,788 - +1.4 389,788 - +1.1 389,788 - +1.6 389,788 - +1.9 389,788 - +1.1 389,788 - -2.0 389,788 - +0.8 389,788 - +2.3 389,788 - -1.2 389,788 - -0.1 389,788 - +0.3 389,788 - +0.6 389,788 - -0.0 389,788 - -1.3 389,788 - +1.4 389,791 + +3.0 389,791 + -2.3 389,791 + -1.0 389,791 + +1.2 389,791 + +1.8 389,792 - +0.6 389,792 - -2.4 389,792 - +1.6 389,792 - +1.5 389,792 - +0.3 389,899 + ABZR87_RS17980 0.12 -1.9 389,899 + ABZR87_RS17980 0.12 -2.4 389,900 - ABZR87_RS17980 0.12 -2.5 389,933 + ABZR87_RS17980 0.16 -3.0 389,934 - ABZR87_RS17980 0.16 +0.7 389,934 - ABZR87_RS17980 0.16 +1.1 389,987 + ABZR87_RS17980 0.22 -1.3 390,037 + ABZR87_RS17980 0.28 +1.2 390,038 - ABZR87_RS17980 0.28 +0.5 390,038 - ABZR87_RS17980 0.28 +2.2 390,253 + ABZR87_RS17980 0.52 +0.9 390,254 - ABZR87_RS17980 0.53 +1.4 390,287 + ABZR87_RS17980 0.56 +0.4 390,287 + ABZR87_RS17980 0.56 +0.8 390,288 - ABZR87_RS17980 0.56 -3.3 390,335 + ABZR87_RS17980 0.62 -0.3 390,368 + ABZR87_RS17980 0.66 -0.2 390,368 + ABZR87_RS17980 0.66 +1.7 390,369 - ABZR87_RS17980 0.66 +1.4 390,369 - ABZR87_RS17980 0.66 +1.0 390,488 + ABZR87_RS17980 0.79 +1.4 390,489 - ABZR87_RS17980 0.79 -3.3 390,626 + +0.7 390,799 + +0.8 390,800 - -0.4 390,800 - +0.1 390,803 - +1.8 390,803 - +1.2 390,850 + ABZR87_RS17985 0.15 -0.9 390,850 + ABZR87_RS17985 0.15 +1.7 390,850 + ABZR87_RS17985 0.15 +0.1 390,851 - ABZR87_RS17985 0.15 +0.3 391,045 + ABZR87_RS17985 0.46 -1.5 391,045 + ABZR87_RS17985 0.46 -0.2 391,045 + ABZR87_RS17985 0.46 +2.4 391,045 + ABZR87_RS17985 0.46 +0.5 391,045 + ABZR87_RS17985 0.46 -1.7 391,045 + ABZR87_RS17985 0.46 +1.0 391,046 - ABZR87_RS17985 0.46 -0.2 391,046 - ABZR87_RS17985 0.46 +2.5 391,046 - ABZR87_RS17985 0.46 +0.7 391,119 + ABZR87_RS17985 0.58 +0.6 391,120 - ABZR87_RS17985 0.58 +2.4 391,228 + ABZR87_RS17985 0.76 +0.7 391,228 + ABZR87_RS17985 0.76 +0.9 391,228 + ABZR87_RS17985 0.76 +1.7 391,313 - ABZR87_RS17985 0.89 +0.8 391,313 - ABZR87_RS17985 0.89 +0.1 391,376 - -0.7 391,376 - +0.8 391,376 - -4.2 391,376 - -1.8 391,376 - -0.4 391,432 + +1.0 391,433 - -0.5 391,433 - -2.1
Or see this region's nucleotide sequence