Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17885

Experiment: soil EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17880 and ABZR87_RS17885 are separated by 9 nucleotidesABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotidesABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotides ABZR87_RS17880: ABZR87_RS17880 - GNAT family protein, at 368,363 to 369,070 _RS17880 ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364 _RS17890 ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445 _RS17895 Position (kb) 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 368.109 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.129 kb on + strandat 368.130 kb on - strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.142 kb on - strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.227 kb on + strandat 368.260 kb on - strandat 368.382 kb on - strandat 368.459 kb on + strand, within ABZR87_RS17880at 368.460 kb on - strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.822 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.919 kb on - strand, within ABZR87_RS17880at 369.081 kb on + strandat 369.082 kb on - strandat 369.100 kb on + strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.108 kb on + strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.427 kb on - strand, within ABZR87_RS17885at 369.538 kb on - strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.646 kb on - strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.867 kb on + strand, within ABZR87_RS17885at 369.868 kb on - strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.569 kb on + strandat 370.569 kb on + strandat 370.570 kb on - strandat 370.570 kb on - strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.588 kb on - strandat 370.588 kb on - strandat 370.972 kb on + strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.307 kb on + strand, within ABZR87_RS17890at 371.386 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.402 kb on - strandat 371.402 kb on - strandat 371.530 kb on + strandat 371.530 kb on + strandat 371.531 kb on - strandat 371.540 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
remove
368,109 + +1.0
368,113 + -2.6
368,113 + +1.6
368,113 + +0.2
368,113 + +2.2
368,113 + -0.2
368,113 + -0.3
368,114 - +0.3
368,114 - -0.9
368,114 - +2.7
368,114 - +1.4
368,114 - +1.7
368,114 - -0.6
368,114 - +0.8
368,129 + +0.9
368,130 - +0.9
368,141 + -1.3
368,141 + +1.4
368,141 + +1.3
368,142 - +0.4
368,174 + -2.8
368,174 + +1.2
368,174 + +1.0
368,175 - -0.7
368,175 - -0.9
368,175 - +0.9
368,175 - +1.3
368,175 - +1.0
368,227 + -1.8
368,260 - -2.9
368,382 - +0.3
368,459 + ABZR87_RS17880 0.14 -0.7
368,460 - ABZR87_RS17880 0.14 -0.3
368,549 + ABZR87_RS17880 0.26 -1.4
368,549 + ABZR87_RS17880 0.26 +0.2
368,549 + ABZR87_RS17880 0.26 +0.1
368,549 + ABZR87_RS17880 0.26 +2.2
368,549 + ABZR87_RS17880 0.26 -3.0
368,549 + ABZR87_RS17880 0.26 -1.5
368,549 + ABZR87_RS17880 0.26 +2.0
368,549 + ABZR87_RS17880 0.26 +1.9
368,549 + ABZR87_RS17880 0.26 +0.3
368,549 + ABZR87_RS17880 0.26 +0.2
368,550 - ABZR87_RS17880 0.26 -3.8
368,550 - ABZR87_RS17880 0.26 -3.6
368,550 - ABZR87_RS17880 0.26 -2.6
368,550 - ABZR87_RS17880 0.26 -2.7
368,550 - ABZR87_RS17880 0.26 -3.1
368,550 - ABZR87_RS17880 0.26 +1.4
368,550 - ABZR87_RS17880 0.26 +3.1
368,550 - ABZR87_RS17880 0.26 +0.8
368,594 + ABZR87_RS17880 0.33 +0.8
368,594 + ABZR87_RS17880 0.33 +2.2
368,594 + ABZR87_RS17880 0.33 -3.4
368,594 + ABZR87_RS17880 0.33 -0.6
368,595 - ABZR87_RS17880 0.33 -1.2
368,595 - ABZR87_RS17880 0.33 -1.9
368,595 - ABZR87_RS17880 0.33 +0.4
368,595 - ABZR87_RS17880 0.33 -3.5
368,595 - ABZR87_RS17880 0.33 +1.1
368,633 + ABZR87_RS17880 0.38 -2.4
368,633 + ABZR87_RS17880 0.38 +0.5
368,634 - ABZR87_RS17880 0.38 -1.3
368,634 - ABZR87_RS17880 0.38 +0.8
368,634 - ABZR87_RS17880 0.38 -1.2
368,634 - ABZR87_RS17880 0.38 +0.8
368,822 + ABZR87_RS17880 0.65 -0.4
368,918 + ABZR87_RS17880 0.78 +1.9
368,918 + ABZR87_RS17880 0.78 -3.0
368,919 - ABZR87_RS17880 0.79 +0.8
369,081 + -4.0
369,082 - -1.8
369,100 + -2.5
369,101 - -1.2
369,101 - -1.8
369,101 - -1.9
369,108 + +0.2
369,109 - +0.7
369,109 - +0.9
369,109 - -3.1
369,426 + ABZR87_RS17885 0.21 -2.1
369,426 + ABZR87_RS17885 0.21 +1.8
369,426 + ABZR87_RS17885 0.21 +2.2
369,427 - ABZR87_RS17885 0.21 -0.8
369,538 - ABZR87_RS17885 0.28 -0.2
369,645 + ABZR87_RS17885 0.35 +1.4
369,645 + ABZR87_RS17885 0.35 +1.8
369,646 - ABZR87_RS17885 0.35 -0.6
369,666 + ABZR87_RS17885 0.36 -2.4
369,666 + ABZR87_RS17885 0.36 +2.2
369,666 + ABZR87_RS17885 0.36 +2.4
369,666 + ABZR87_RS17885 0.36 -2.0
369,666 + ABZR87_RS17885 0.36 +2.4
369,666 + ABZR87_RS17885 0.36 +0.4
369,666 + ABZR87_RS17885 0.36 +2.7
369,666 + ABZR87_RS17885 0.36 +0.9
369,667 - ABZR87_RS17885 0.36 +0.3
369,667 - ABZR87_RS17885 0.36 -0.4
369,667 - ABZR87_RS17885 0.36 +1.5
369,667 - ABZR87_RS17885 0.36 -2.2
369,667 - ABZR87_RS17885 0.36 +0.2
369,668 + ABZR87_RS17885 0.36 -2.2
369,668 + ABZR87_RS17885 0.36 -0.7
369,668 + ABZR87_RS17885 0.36 -3.2
369,669 - ABZR87_RS17885 0.36 -1.8
369,669 - ABZR87_RS17885 0.36 +1.1
369,669 - ABZR87_RS17885 0.36 +0.6
369,735 + ABZR87_RS17885 0.41 -1.5
369,735 + ABZR87_RS17885 0.41 +0.2
369,735 + ABZR87_RS17885 0.41 -2.5
369,736 - ABZR87_RS17885 0.41 -2.5
369,736 - ABZR87_RS17885 0.41 -2.5
369,736 - ABZR87_RS17885 0.41 +0.3
369,736 - ABZR87_RS17885 0.41 -1.3
369,867 + ABZR87_RS17885 0.49 +0.4
369,868 - ABZR87_RS17885 0.49 -0.5
370,029 + ABZR87_RS17885 0.59 +2.8
370,029 + ABZR87_RS17885 0.59 -0.8
370,029 + ABZR87_RS17885 0.59 +0.3
370,029 + ABZR87_RS17885 0.59 -0.4
370,029 + ABZR87_RS17885 0.59 -2.9
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -1.9
370,029 + ABZR87_RS17885 0.59 +1.2
370,029 + ABZR87_RS17885 0.59 +2.3
370,029 + ABZR87_RS17885 0.59 -0.2
370,029 + ABZR87_RS17885 0.59 +0.6
370,030 - ABZR87_RS17885 0.59 -1.3
370,030 - ABZR87_RS17885 0.59 +0.6
370,030 - ABZR87_RS17885 0.59 -1.8
370,030 - ABZR87_RS17885 0.59 +0.4
370,030 - ABZR87_RS17885 0.59 -2.4
370,030 - ABZR87_RS17885 0.59 +1.1
370,030 - ABZR87_RS17885 0.59 +0.4
370,030 - ABZR87_RS17885 0.59 +1.3
370,030 - ABZR87_RS17885 0.59 -2.0
370,222 + ABZR87_RS17885 0.71 +1.6
370,222 + ABZR87_RS17885 0.71 +2.6
370,223 - ABZR87_RS17885 0.71 -3.5
370,223 - ABZR87_RS17885 0.71 -1.2
370,452 + ABZR87_RS17885 0.85 +0.2
370,452 + ABZR87_RS17885 0.85 +1.2
370,453 - ABZR87_RS17885 0.85 -3.0
370,453 - ABZR87_RS17885 0.85 +1.1
370,453 - ABZR87_RS17885 0.85 -0.8
370,453 - ABZR87_RS17885 0.85 -0.4
370,495 + ABZR87_RS17885 0.88 +0.9
370,495 + ABZR87_RS17885 0.88 -1.7
370,495 + ABZR87_RS17885 0.88 +1.9
370,495 + ABZR87_RS17885 0.88 +1.4
370,496 - ABZR87_RS17885 0.88 -0.2
370,496 - ABZR87_RS17885 0.88 +0.5
370,496 - ABZR87_RS17885 0.88 -3.1
370,569 + -0.1
370,569 + +2.0
370,570 - -3.7
370,570 - -1.2
370,587 + -2.7
370,587 + +2.2
370,587 + +3.5
370,588 - +1.0
370,588 - -3.5
370,972 + ABZR87_RS17890 0.23 -1.1
370,973 - ABZR87_RS17890 0.24 -0.4
370,973 - ABZR87_RS17890 0.24 -0.6
371,028 + ABZR87_RS17890 0.34 -1.9
371,028 + ABZR87_RS17890 0.34 +1.2
371,029 - ABZR87_RS17890 0.35 -2.4
371,029 - ABZR87_RS17890 0.35 +1.0
371,029 - ABZR87_RS17890 0.35 -1.6
371,307 + ABZR87_RS17890 0.89 +1.4
371,386 + +0.2
371,401 + +1.1
371,401 + -2.8
371,401 + -0.6
371,402 - +1.2
371,402 - +1.0
371,530 + +1.1
371,530 + -2.9
371,531 - +1.1
371,540 - -0.4

Or see this region's nucleotide sequence