Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17560 and ABZR87_RS17565 overlap by 17 nucleotides ABZR87_RS17565 and ABZR87_RS17570 are separated by 95 nucleotides ABZR87_RS17570 and ABZR87_RS17575 are separated by 79 nucleotides
ABZR87_RS17560: ABZR87_RS17560 - ABC transporter substrate-binding protein, at 301,651 to 302,859
_RS17560
ABZR87_RS17565: ABZR87_RS17565 - helix-turn-helix transcriptional regulator, at 302,843 to 303,646
_RS17565
ABZR87_RS17570: ABZR87_RS17570 - hypothetical protein, at 303,742 to 304,038
_RS17570
ABZR87_RS17575: ABZR87_RS17575 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 304,118 to 305,422
_RS17575
Position (kb) 303
304
305 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 302.771 kb on - strand at 302.773 kb on + strand at 302.773 kb on + strand at 302.774 kb on - strand at 302.774 kb on - strand at 302.814 kb on + strand at 302.815 kb on - strand at 303.128 kb on - strand, within ABZR87_RS17565 at 303.145 kb on + strand, within ABZR87_RS17565 at 303.146 kb on - strand, within ABZR87_RS17565 at 303.378 kb on + strand, within ABZR87_RS17565 at 303.379 kb on - strand, within ABZR87_RS17565 at 303.426 kb on - strand, within ABZR87_RS17565 at 303.585 kb on + strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.935 kb on + strand, within ABZR87_RS17570 at 303.936 kb on - strand, within ABZR87_RS17570 at 304.081 kb on + strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.082 kb on - strand at 304.226 kb on + strand at 304.226 kb on + strand at 304.304 kb on + strand, within ABZR87_RS17575 at 304.304 kb on + strand, within ABZR87_RS17575 at 304.304 kb on + strand, within ABZR87_RS17575 at 304.304 kb on + strand, within ABZR87_RS17575 at 304.305 kb on - strand, within ABZR87_RS17575 at 304.305 kb on - strand, within ABZR87_RS17575 at 304.305 kb on - strand, within ABZR87_RS17575 at 304.412 kb on + strand, within ABZR87_RS17575 at 304.412 kb on + strand, within ABZR87_RS17575 at 304.469 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.482 kb on - strand, within ABZR87_RS17575 at 304.706 kb on + strand, within ABZR87_RS17575 at 304.706 kb on + strand, within ABZR87_RS17575 at 304.707 kb on - strand, within ABZR87_RS17575 at 304.763 kb on + strand, within ABZR87_RS17575 at 304.763 kb on + strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.874 kb on + strand, within ABZR87_RS17575 at 304.874 kb on + strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.889 kb on + strand, within ABZR87_RS17575 at 304.890 kb on - strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 302,771 - +4.3 302,773 + +0.5 302,773 + +0.1 302,774 - -2.3 302,774 - -0.5 302,814 + +0.3 302,815 - -2.5 303,128 - ABZR87_RS17565 0.35 -2.7 303,145 + ABZR87_RS17565 0.38 +1.3 303,146 - ABZR87_RS17565 0.38 +0.8 303,378 + ABZR87_RS17565 0.67 -0.8 303,379 - ABZR87_RS17565 0.67 +0.3 303,426 - ABZR87_RS17565 0.73 -3.9 303,585 + -3.7 303,586 - +1.3 303,586 - +0.4 303,586 - +0.7 303,586 - -1.6 303,586 - -0.6 303,704 + +2.4 303,704 + +1.1 303,704 + +0.9 303,704 + -0.6 303,704 + +0.1 303,704 + -3.6 303,704 + -2.1 303,705 - +2.5 303,705 - -0.6 303,705 - +0.3 303,705 - +4.0 303,705 - +1.5 303,705 - +0.6 303,705 - +1.4 303,705 - +2.6 303,935 + ABZR87_RS17570 0.65 +2.0 303,936 - ABZR87_RS17570 0.65 -4.0 304,081 + -0.6 304,082 - -0.6 304,082 - +0.0 304,082 - +1.3 304,082 - -1.5 304,082 - +2.5 304,082 - +1.1 304,082 - -2.6 304,226 + +0.2 304,226 + +1.1 304,304 + ABZR87_RS17575 0.14 -2.4 304,304 + ABZR87_RS17575 0.14 +1.4 304,304 + ABZR87_RS17575 0.14 +3.3 304,304 + ABZR87_RS17575 0.14 +1.5 304,305 - ABZR87_RS17575 0.14 +0.8 304,305 - ABZR87_RS17575 0.14 +0.3 304,305 - ABZR87_RS17575 0.14 +0.6 304,412 + ABZR87_RS17575 0.23 -3.3 304,412 + ABZR87_RS17575 0.23 -3.7 304,469 + ABZR87_RS17575 0.27 +0.8 304,481 + ABZR87_RS17575 0.28 -3.6 304,481 + ABZR87_RS17575 0.28 -0.6 304,481 + ABZR87_RS17575 0.28 -0.4 304,481 + ABZR87_RS17575 0.28 +1.5 304,481 + ABZR87_RS17575 0.28 +1.3 304,482 - ABZR87_RS17575 0.28 +2.2 304,706 + ABZR87_RS17575 0.45 -3.6 304,706 + ABZR87_RS17575 0.45 +0.4 304,707 - ABZR87_RS17575 0.45 -2.8 304,763 + ABZR87_RS17575 0.49 -0.7 304,763 + ABZR87_RS17575 0.49 -0.6 304,764 - ABZR87_RS17575 0.50 +0.3 304,764 - ABZR87_RS17575 0.50 +1.8 304,764 - ABZR87_RS17575 0.50 -2.6 304,874 + ABZR87_RS17575 0.58 -3.1 304,874 + ABZR87_RS17575 0.58 -0.1 304,875 - ABZR87_RS17575 0.58 -0.6 304,875 - ABZR87_RS17575 0.58 -3.4 304,875 - ABZR87_RS17575 0.58 +1.5 304,889 + ABZR87_RS17575 0.59 +2.0 304,890 - ABZR87_RS17575 0.59 +0.9 304,916 + ABZR87_RS17575 0.61 +0.8 304,916 + ABZR87_RS17575 0.61 -3.2 304,916 + ABZR87_RS17575 0.61 +0.5
Or see this region's nucleotide sequence