Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17565

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17560 and ABZR87_RS17565 overlap by 17 nucleotidesABZR87_RS17565 and ABZR87_RS17570 are separated by 95 nucleotidesABZR87_RS17570 and ABZR87_RS17575 are separated by 79 nucleotides ABZR87_RS17560: ABZR87_RS17560 - ABC transporter substrate-binding protein, at 301,651 to 302,859 _RS17560 ABZR87_RS17565: ABZR87_RS17565 - helix-turn-helix transcriptional regulator, at 302,843 to 303,646 _RS17565 ABZR87_RS17570: ABZR87_RS17570 - hypothetical protein, at 303,742 to 304,038 _RS17570 ABZR87_RS17575: ABZR87_RS17575 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 304,118 to 305,422 _RS17575 Position (kb) 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.012 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.112 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.168 kb on - strand, within ABZR87_RS17560at 302.278 kb on + strand, within ABZR87_RS17560at 302.279 kb on - strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.570 kb on - strand, within ABZR87_RS17560at 302.587 kb on + strand, within ABZR87_RS17560at 302.587 kb on + strand, within ABZR87_RS17560at 302.588 kb on - strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.722 kb on + strand, within ABZR87_RS17560at 302.722 kb on + strand, within ABZR87_RS17560at 302.723 kb on - strand, within ABZR87_RS17560at 302.771 kb on - strandat 302.773 kb on + strandat 302.773 kb on + strandat 302.774 kb on - strandat 302.774 kb on - strandat 302.814 kb on + strandat 302.815 kb on - strandat 303.128 kb on - strand, within ABZR87_RS17565at 303.145 kb on + strand, within ABZR87_RS17565at 303.146 kb on - strand, within ABZR87_RS17565at 303.378 kb on + strand, within ABZR87_RS17565at 303.379 kb on - strand, within ABZR87_RS17565at 303.426 kb on - strand, within ABZR87_RS17565at 303.585 kb on + strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.935 kb on + strand, within ABZR87_RS17570at 303.936 kb on - strand, within ABZR87_RS17570at 304.081 kb on + strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.226 kb on + strandat 304.226 kb on + strandat 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.412 kb on + strand, within ABZR87_RS17575at 304.412 kb on + strand, within ABZR87_RS17575at 304.469 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.482 kb on - strand, within ABZR87_RS17575

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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302,011 + ABZR87_RS17560 0.30 +0.4
302,011 + ABZR87_RS17560 0.30 +0.2
302,011 + ABZR87_RS17560 0.30 +0.1
302,012 - ABZR87_RS17560 0.30 +0.9
302,084 - ABZR87_RS17560 0.36 +0.1
302,084 - ABZR87_RS17560 0.36 -3.0
302,112 + ABZR87_RS17560 0.38 +1.4
302,149 + ABZR87_RS17560 0.41 -3.5
302,149 + ABZR87_RS17560 0.41 +1.5
302,150 - ABZR87_RS17560 0.41 +1.1
302,150 - ABZR87_RS17560 0.41 -0.4
302,167 + ABZR87_RS17560 0.43 +0.7
302,167 + ABZR87_RS17560 0.43 -0.1
302,167 + ABZR87_RS17560 0.43 +1.7
302,167 + ABZR87_RS17560 0.43 +0.5
302,168 - ABZR87_RS17560 0.43 +0.8
302,278 + ABZR87_RS17560 0.52 +0.1
302,279 - ABZR87_RS17560 0.52 +0.4
302,524 + ABZR87_RS17560 0.72 -3.6
302,524 + ABZR87_RS17560 0.72 +0.8
302,524 + ABZR87_RS17560 0.72 +1.0
302,524 + ABZR87_RS17560 0.72 -1.5
302,524 + ABZR87_RS17560 0.72 -0.1
302,569 + ABZR87_RS17560 0.76 -0.7
302,569 + ABZR87_RS17560 0.76 -0.1
302,569 + ABZR87_RS17560 0.76 -0.7
302,569 + ABZR87_RS17560 0.76 +0.4
302,570 - ABZR87_RS17560 0.76 -3.7
302,587 + ABZR87_RS17560 0.77 +0.6
302,587 + ABZR87_RS17560 0.77 +1.8
302,588 - ABZR87_RS17560 0.78 -1.2
302,671 + ABZR87_RS17560 0.84 +2.7
302,671 + ABZR87_RS17560 0.84 -3.2
302,671 + ABZR87_RS17560 0.84 -2.6
302,671 + ABZR87_RS17560 0.84 +1.1
302,672 - ABZR87_RS17560 0.84 +0.7
302,672 - ABZR87_RS17560 0.84 -2.4
302,672 - ABZR87_RS17560 0.84 -0.1
302,672 - ABZR87_RS17560 0.84 +1.7
302,672 - ABZR87_RS17560 0.84 -2.7
302,672 - ABZR87_RS17560 0.84 +1.5
302,672 - ABZR87_RS17560 0.84 -0.1
302,722 + ABZR87_RS17560 0.89 +0.7
302,722 + ABZR87_RS17560 0.89 +2.4
302,723 - ABZR87_RS17560 0.89 -3.5
302,771 - +4.3
302,773 + +0.5
302,773 + +0.1
302,774 - -2.3
302,774 - -0.5
302,814 + +0.3
302,815 - -2.5
303,128 - ABZR87_RS17565 0.35 -2.7
303,145 + ABZR87_RS17565 0.38 +1.3
303,146 - ABZR87_RS17565 0.38 +0.8
303,378 + ABZR87_RS17565 0.67 -0.8
303,379 - ABZR87_RS17565 0.67 +0.3
303,426 - ABZR87_RS17565 0.73 -3.9
303,585 + -3.7
303,586 - +1.3
303,586 - +0.4
303,586 - +0.7
303,586 - -1.6
303,586 - -0.6
303,704 + +2.4
303,704 + +1.1
303,704 + +0.9
303,704 + -0.6
303,704 + +0.1
303,704 + -3.6
303,704 + -2.1
303,705 - +2.5
303,705 - -0.6
303,705 - +0.3
303,705 - +4.0
303,705 - +1.5
303,705 - +0.6
303,705 - +1.4
303,705 - +2.6
303,935 + ABZR87_RS17570 0.65 +2.0
303,936 - ABZR87_RS17570 0.65 -4.0
304,081 + -0.6
304,082 - -0.6
304,082 - +0.0
304,082 - +1.3
304,082 - -1.5
304,082 - +2.5
304,082 - +1.1
304,082 - -2.6
304,226 + +0.2
304,226 + +1.1
304,304 + ABZR87_RS17575 0.14 -2.4
304,304 + ABZR87_RS17575 0.14 +1.4
304,304 + ABZR87_RS17575 0.14 +3.3
304,304 + ABZR87_RS17575 0.14 +1.5
304,305 - ABZR87_RS17575 0.14 +0.8
304,305 - ABZR87_RS17575 0.14 +0.3
304,305 - ABZR87_RS17575 0.14 +0.6
304,412 + ABZR87_RS17575 0.23 -3.3
304,412 + ABZR87_RS17575 0.23 -3.7
304,469 + ABZR87_RS17575 0.27 +0.8
304,481 + ABZR87_RS17575 0.28 -3.6
304,481 + ABZR87_RS17575 0.28 -0.6
304,481 + ABZR87_RS17575 0.28 -0.4
304,481 + ABZR87_RS17575 0.28 +1.5
304,481 + ABZR87_RS17575 0.28 +1.3
304,482 - ABZR87_RS17575 0.28 +2.2

Or see this region's nucleotide sequence