Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17205

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17200 and ABZR87_RS17205 are separated by 50 nucleotidesABZR87_RS17205 and ABZR87_RS17210 overlap by 4 nucleotides ABZR87_RS17200: ABZR87_RS17200 - 4-alpha-glucanotransferase, at 206,067 to 208,349 _RS17200 ABZR87_RS17205: ABZR87_RS17205 - malto-oligosyltrehalose trehalohydrolase, at 208,400 to 210,241 _RS17205 ABZR87_RS17210: ABZR87_RS17210 - glycogen debranching protein GlgX, at 210,238 to 212,550 _RS17210 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 207.505 kb on + strand, within ABZR87_RS17200at 207.506 kb on - strand, within ABZR87_RS17200at 207.506 kb on - strand, within ABZR87_RS17200at 207.625 kb on + strand, within ABZR87_RS17200at 207.727 kb on + strand, within ABZR87_RS17200at 207.781 kb on + strand, within ABZR87_RS17200at 207.781 kb on + strand, within ABZR87_RS17200at 207.781 kb on + strand, within ABZR87_RS17200at 207.781 kb on + strand, within ABZR87_RS17200at 207.856 kb on + strand, within ABZR87_RS17200at 207.856 kb on + strand, within ABZR87_RS17200at 207.857 kb on - strand, within ABZR87_RS17200at 207.932 kb on - strand, within ABZR87_RS17200at 208.123 kb on - strandat 208.329 kb on + strandat 208.330 kb on - strandat 208.372 kb on + strandat 208.372 kb on + strandat 208.372 kb on + strandat 208.373 kb on - strandat 208.373 kb on - strandat 208.373 kb on - strandat 208.373 kb on - strandat 208.628 kb on + strand, within ABZR87_RS17205at 208.767 kb on + strand, within ABZR87_RS17205at 208.900 kb on - strand, within ABZR87_RS17205at 208.900 kb on - strand, within ABZR87_RS17205at 209.211 kb on + strand, within ABZR87_RS17205at 209.212 kb on - strand, within ABZR87_RS17205at 209.214 kb on + strand, within ABZR87_RS17205at 209.214 kb on + strand, within ABZR87_RS17205at 209.215 kb on - strand, within ABZR87_RS17205at 209.215 kb on - strand, within ABZR87_RS17205at 209.215 kb on - strand, within ABZR87_RS17205at 209.255 kb on - strand, within ABZR87_RS17205at 209.381 kb on + strand, within ABZR87_RS17205at 209.545 kb on + strand, within ABZR87_RS17205at 209.545 kb on + strand, within ABZR87_RS17205at 209.546 kb on - strand, within ABZR87_RS17205at 209.546 kb on - strand, within ABZR87_RS17205at 209.578 kb on - strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.590 kb on - strand, within ABZR87_RS17205at 209.590 kb on - strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.617 kb on - strand, within ABZR87_RS17205at 209.694 kb on + strand, within ABZR87_RS17205at 209.694 kb on + strand, within ABZR87_RS17205at 209.720 kb on + strand, within ABZR87_RS17205at 209.730 kb on + strand, within ABZR87_RS17205at 209.731 kb on - strand, within ABZR87_RS17205at 209.731 kb on - strand, within ABZR87_RS17205at 209.862 kb on + strand, within ABZR87_RS17205at 209.917 kb on - strand, within ABZR87_RS17205at 209.951 kb on + strand, within ABZR87_RS17205at 210.000 kb on - strand, within ABZR87_RS17205at 210.066 kb on + strandat 210.066 kb on + strandat 210.066 kb on + strandat 210.067 kb on - strandat 210.067 kb on - strandat 210.791 kb on + strand, within ABZR87_RS17210at 210.791 kb on + strand, within ABZR87_RS17210at 210.791 kb on + strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.846 kb on + strand, within ABZR87_RS17210at 210.846 kb on + strand, within ABZR87_RS17210at 210.848 kb on + strand, within ABZR87_RS17210at 210.848 kb on + strand, within ABZR87_RS17210at 210.849 kb on - strand, within ABZR87_RS17210at 210.923 kb on + strand, within ABZR87_RS17210at 210.924 kb on - strand, within ABZR87_RS17210at 211.152 kb on - strand, within ABZR87_RS17210at 211.152 kb on - strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.197 kb on - strand, within ABZR87_RS17210at 211.197 kb on - strand, within ABZR87_RS17210

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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207,505 + ABZR87_RS17200 0.63 -3.0
207,506 - ABZR87_RS17200 0.63 -0.1
207,506 - ABZR87_RS17200 0.63 -1.9
207,625 + ABZR87_RS17200 0.68 +4.2
207,727 + ABZR87_RS17200 0.73 +1.9
207,781 + ABZR87_RS17200 0.75 +0.0
207,781 + ABZR87_RS17200 0.75 +1.2
207,781 + ABZR87_RS17200 0.75 -2.0
207,781 + ABZR87_RS17200 0.75 +0.1
207,856 + ABZR87_RS17200 0.78 -3.4
207,856 + ABZR87_RS17200 0.78 -0.6
207,857 - ABZR87_RS17200 0.78 +1.4
207,932 - ABZR87_RS17200 0.82 -3.5
208,123 - +1.4
208,329 + +0.8
208,330 - -1.6
208,372 + +0.1
208,372 + +1.1
208,372 + -1.5
208,373 - -1.6
208,373 - -2.2
208,373 - -2.4
208,373 - +0.6
208,628 + ABZR87_RS17205 0.12 +1.0
208,767 + ABZR87_RS17205 0.20 +0.1
208,900 - ABZR87_RS17205 0.27 -1.2
208,900 - ABZR87_RS17205 0.27 +1.2
209,211 + ABZR87_RS17205 0.44 -2.9
209,212 - ABZR87_RS17205 0.44 +2.6
209,214 + ABZR87_RS17205 0.44 +2.1
209,214 + ABZR87_RS17205 0.44 -0.9
209,215 - ABZR87_RS17205 0.44 -3.6
209,215 - ABZR87_RS17205 0.44 -1.5
209,215 - ABZR87_RS17205 0.44 +1.1
209,255 - ABZR87_RS17205 0.46 +1.7
209,381 + ABZR87_RS17205 0.53 -1.0
209,545 + ABZR87_RS17205 0.62 -1.4
209,545 + ABZR87_RS17205 0.62 -0.1
209,546 - ABZR87_RS17205 0.62 +1.0
209,546 - ABZR87_RS17205 0.62 -0.9
209,578 - ABZR87_RS17205 0.64 -1.9
209,589 + ABZR87_RS17205 0.65 -2.0
209,589 + ABZR87_RS17205 0.65 -0.1
209,589 + ABZR87_RS17205 0.65 +0.2
209,589 + ABZR87_RS17205 0.65 -2.1
209,589 + ABZR87_RS17205 0.65 -3.7
209,590 - ABZR87_RS17205 0.65 -1.5
209,590 - ABZR87_RS17205 0.65 -1.5
209,616 + ABZR87_RS17205 0.66 +2.4
209,616 + ABZR87_RS17205 0.66 -1.1
209,616 + ABZR87_RS17205 0.66 +2.1
209,617 - ABZR87_RS17205 0.66 +0.2
209,694 + ABZR87_RS17205 0.70 -3.7
209,694 + ABZR87_RS17205 0.70 +1.7
209,720 + ABZR87_RS17205 0.72 -3.4
209,730 + ABZR87_RS17205 0.72 -2.9
209,731 - ABZR87_RS17205 0.72 -0.1
209,731 - ABZR87_RS17205 0.72 -0.4
209,862 + ABZR87_RS17205 0.79 -0.3
209,917 - ABZR87_RS17205 0.82 -2.9
209,951 + ABZR87_RS17205 0.84 -1.7
210,000 - ABZR87_RS17205 0.87 -2.3
210,066 + -0.1
210,066 + +0.2
210,066 + -1.0
210,067 - -1.0
210,067 - -0.6
210,791 + ABZR87_RS17210 0.24 +2.3
210,791 + ABZR87_RS17210 0.24 -0.0
210,791 + ABZR87_RS17210 0.24 +0.6
210,792 - ABZR87_RS17210 0.24 -1.0
210,792 - ABZR87_RS17210 0.24 -3.9
210,792 - ABZR87_RS17210 0.24 -2.5
210,792 - ABZR87_RS17210 0.24 -0.2
210,846 + ABZR87_RS17210 0.26 -3.3
210,846 + ABZR87_RS17210 0.26 -1.0
210,848 + ABZR87_RS17210 0.26 -0.9
210,848 + ABZR87_RS17210 0.26 -1.7
210,849 - ABZR87_RS17210 0.26 +0.2
210,923 + ABZR87_RS17210 0.30 -1.8
210,924 - ABZR87_RS17210 0.30 +1.3
211,152 - ABZR87_RS17210 0.40 +0.6
211,152 - ABZR87_RS17210 0.40 -1.0
211,196 + ABZR87_RS17210 0.41 -1.5
211,196 + ABZR87_RS17210 0.41 -1.5
211,196 + ABZR87_RS17210 0.41 -3.8
211,197 - ABZR87_RS17210 0.41 -1.9
211,197 - ABZR87_RS17210 0.41 +1.9

Or see this region's nucleotide sequence