Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17095 and ABZR87_RS17100 are separated by 47 nucleotides ABZR87_RS17100 and ABZR87_RS17105 are separated by 37 nucleotides ABZR87_RS17105 and ABZR87_RS17110 are separated by 521 nucleotides
ABZR87_RS17095: ABZR87_RS17095 - copper oxidase, at 182,137 to 183,435
_RS17095
ABZR87_RS17100: ABZR87_RS17100 - cupredoxin family protein, at 183,483 to 183,971
_RS17100
ABZR87_RS17105: ABZR87_RS17105 - copper-binding protein, at 184,009 to 184,329
_RS17105
ABZR87_RS17110: ABZR87_RS17110 - glycosyltransferase family 90 protein, at 184,851 to 185,711
_RS17110
Position (kb) 183
184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.606 kb on - strand, within ABZR87_RS17095 at 182.641 kb on + strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.765 kb on - strand, within ABZR87_RS17095 at 182.765 kb on - strand, within ABZR87_RS17095 at 182.785 kb on + strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.376 kb on + strand at 183.376 kb on + strand at 183.377 kb on - strand at 183.377 kb on - strand at 183.403 kb on + strand at 183.409 kb on + strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.665 kb on + strand, within ABZR87_RS17100 at 183.665 kb on + strand, within ABZR87_RS17100 at 183.666 kb on - strand, within ABZR87_RS17100 at 183.733 kb on + strand, within ABZR87_RS17100 at 183.838 kb on + strand, within ABZR87_RS17100 at 183.839 kb on - strand, within ABZR87_RS17100 at 183.839 kb on - strand, within ABZR87_RS17100 at 184.029 kb on - strand at 184.250 kb on + strand, within ABZR87_RS17105 at 184.250 kb on + strand, within ABZR87_RS17105 at 184.251 kb on - strand, within ABZR87_RS17105 at 184.251 kb on - strand, within ABZR87_RS17105 at 184.275 kb on + strand, within ABZR87_RS17105 at 184.276 kb on - strand, within ABZR87_RS17105 at 184.276 kb on - strand, within ABZR87_RS17105 at 184.308 kb on - strand at 184.327 kb on + strand at 184.327 kb on + strand at 184.328 kb on - strand at 184.328 kb on - strand at 184.367 kb on - strand at 184.367 kb on - strand at 184.456 kb on + strand at 184.456 kb on + strand at 184.457 kb on - strand at 184.457 kb on - strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.508 kb on - strand at 184.508 kb on - strand at 184.512 kb on + strand at 184.513 kb on - strand at 184.628 kb on + strand at 184.628 kb on + strand at 184.629 kb on - strand at 184.629 kb on - strand at 184.636 kb on - strand at 184.680 kb on - strand at 184.720 kb on - strand at 184.758 kb on + strand at 184.832 kb on + strand at 184.879 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.955 kb on + strand, within ABZR87_RS17110 at 184.956 kb on - strand, within ABZR87_RS17110
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 182,605 + ABZR87_RS17095 0.36 +0.6 182,605 + ABZR87_RS17095 0.36 -3.6 182,605 + ABZR87_RS17095 0.36 -3.3 182,605 + ABZR87_RS17095 0.36 +1.0 182,606 - ABZR87_RS17095 0.36 +1.6 182,641 + ABZR87_RS17095 0.39 -1.0 182,642 - ABZR87_RS17095 0.39 -3.4 182,642 - ABZR87_RS17095 0.39 +1.9 182,642 - ABZR87_RS17095 0.39 -1.1 182,642 - ABZR87_RS17095 0.39 -1.2 182,642 - ABZR87_RS17095 0.39 -0.4 182,642 - ABZR87_RS17095 0.39 +0.5 182,765 - ABZR87_RS17095 0.48 +0.3 182,765 - ABZR87_RS17095 0.48 +0.5 182,785 + ABZR87_RS17095 0.50 +1.7 182,786 - ABZR87_RS17095 0.50 -3.1 182,786 - ABZR87_RS17095 0.50 +0.3 182,786 - ABZR87_RS17095 0.50 -2.9 182,946 + ABZR87_RS17095 0.62 +0.1 182,946 + ABZR87_RS17095 0.62 +3.1 182,946 + ABZR87_RS17095 0.62 -3.6 182,946 + ABZR87_RS17095 0.62 +1.2 183,193 + ABZR87_RS17095 0.81 -2.6 183,193 + ABZR87_RS17095 0.81 +0.4 183,193 + ABZR87_RS17095 0.81 +0.7 183,193 + ABZR87_RS17095 0.81 +1.0 183,193 + ABZR87_RS17095 0.81 +1.0 183,194 - ABZR87_RS17095 0.81 +3.3 183,194 - ABZR87_RS17095 0.81 -2.0 183,194 - ABZR87_RS17095 0.81 -3.1 183,194 - ABZR87_RS17095 0.81 +1.5 183,194 - ABZR87_RS17095 0.81 +0.1 183,359 - +0.1 183,359 - -3.0 183,359 - +2.5 183,359 - +0.1 183,359 - -1.6 183,376 + +2.8 183,376 + +0.0 183,377 - +0.5 183,377 - +1.4 183,403 + +1.3 183,409 + -0.5 183,410 - +0.7 183,410 - +1.3 183,410 - -0.9 183,410 - +1.3 183,410 - -0.1 183,459 - -0.4 183,459 - -1.5 183,468 - +0.1 183,468 - +0.6 183,468 - -1.7 183,468 - +0.0 183,665 + ABZR87_RS17100 0.37 +1.7 183,665 + ABZR87_RS17100 0.37 +0.3 183,666 - ABZR87_RS17100 0.37 -0.9 183,733 + ABZR87_RS17100 0.51 +1.1 183,838 + ABZR87_RS17100 0.73 +0.6 183,839 - ABZR87_RS17100 0.73 +1.1 183,839 - ABZR87_RS17100 0.73 -1.4 184,029 - -3.5 184,250 + ABZR87_RS17105 0.75 -3.3 184,250 + ABZR87_RS17105 0.75 -0.4 184,251 - ABZR87_RS17105 0.75 -0.4 184,251 - ABZR87_RS17105 0.75 +0.9 184,275 + ABZR87_RS17105 0.83 +0.6 184,276 - ABZR87_RS17105 0.83 +1.8 184,276 - ABZR87_RS17105 0.83 +1.1 184,308 - -2.3 184,327 + -1.7 184,327 + +0.6 184,328 - -2.3 184,328 - -0.5 184,367 - +0.4 184,367 - +0.6 184,456 + -0.1 184,456 + +0.4 184,457 - -2.9 184,457 - -1.2 184,507 + +0.8 184,507 + -2.6 184,507 + -3.5 184,507 + -0.9 184,507 + -0.4 184,507 + -3.3 184,507 + -3.4 184,507 + -2.9 184,508 - +3.0 184,508 - +2.0 184,512 + -0.2 184,513 - +0.0 184,628 + +1.8 184,628 + -3.8 184,629 - +1.8 184,629 - -2.6 184,636 - -0.2 184,680 - -2.5 184,720 - +1.3 184,758 + +0.4 184,832 + +2.2 184,879 - +1.7 184,882 - +1.9 184,882 - +3.1 184,882 - +1.8 184,955 + ABZR87_RS17110 0.12 +0.8 184,956 - ABZR87_RS17110 0.12 -3.1
Or see this region's nucleotide sequence