Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16835 and ABZR87_RS16840 are separated by 374 nucleotides ABZR87_RS16840 and ABZR87_RS16845 are separated by 274 nucleotides ABZR87_RS16845 and ABZR87_RS16850 are separated by 340 nucleotides
ABZR87_RS16835: ABZR87_RS16835 - toll/interleukin-1 receptor domain-containing protein, at 132,161 to 133,432
_RS16835
ABZR87_RS16840: ABZR87_RS16840 - hypothetical protein, at 133,807 to 134,085
_RS16840
ABZR87_RS16845: ABZR87_RS16845 - hypothetical protein, at 134,360 to 134,710
_RS16845
ABZR87_RS16850: ABZR87_RS16850 - HD domain-containing phosphohydrolase, at 135,051 to 136,436
_RS16850
Position (kb) 134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 133.387 kb on - strand at 133.389 kb on - strand at 133.399 kb on - strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.528 kb on + strand at 133.528 kb on + strand at 133.528 kb on + strand at 133.529 kb on - strand at 133.529 kb on - strand at 133.547 kb on - strand at 133.548 kb on + strand at 133.548 kb on + strand at 133.548 kb on + strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.622 kb on + strand at 133.622 kb on + strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.689 kb on - strand at 133.689 kb on - strand at 133.729 kb on - strand at 133.832 kb on - strand at 133.832 kb on - strand at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.963 kb on + strand, within ABZR87_RS16840 at 133.964 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 134.083 kb on + strand at 134.087 kb on + strand at 134.088 kb on - strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.129 kb on + strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.133 kb on - strand at 134.133 kb on - strand at 134.371 kb on + strand at 134.664 kb on + strand, within ABZR87_RS16845 at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.727 kb on + strand at 134.727 kb on + strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.740 kb on + strand at 134.740 kb on + strand at 134.741 kb on - strand at 134.907 kb on + strand at 134.907 kb on + strand at 134.908 kb on - strand at 134.908 kb on - strand at 134.978 kb on - strand at 135.012 kb on + strand at 135.013 kb on - strand at 135.013 kb on - strand at 135.041 kb on + strand at 135.042 kb on - strand at 135.073 kb on + strand at 135.074 kb on - strand at 135.074 kb on - strand at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.252 kb on - strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.330 kb on - strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.476 kb on + strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.568 kb on + strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.595 kb on - strand, within ABZR87_RS16850
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 133,387 - +1.1 133,389 - -0.7 133,399 - +0.4 133,460 + -2.7 133,460 + -2.4 133,460 + +0.2 133,460 + -2.1 133,461 - -3.1 133,461 - -0.4 133,461 - -3.0 133,461 - +1.1 133,528 + -3.2 133,528 + +2.6 133,528 + +1.2 133,529 - -3.4 133,529 - +1.7 133,547 - -2.8 133,548 + +1.4 133,548 + +1.3 133,548 + +0.1 133,549 - +0.3 133,549 - +0.7 133,549 - -4.0 133,549 - +0.3 133,622 + -0.3 133,622 + -1.6 133,623 - -3.2 133,623 - +4.9 133,623 - +0.3 133,623 - -0.5 133,623 - +0.4 133,689 - +0.1 133,689 - -4.2 133,729 - +0.2 133,832 - -3.4 133,832 - +1.3 133,861 + ABZR87_RS16840 0.19 -1.5 133,861 + ABZR87_RS16840 0.19 +0.2 133,861 + ABZR87_RS16840 0.19 -2.2 133,861 + ABZR87_RS16840 0.19 +1.1 133,861 + ABZR87_RS16840 0.19 -0.7 133,862 - ABZR87_RS16840 0.20 -1.0 133,862 - ABZR87_RS16840 0.20 -0.4 133,862 - ABZR87_RS16840 0.20 +1.4 133,862 - ABZR87_RS16840 0.20 -2.9 133,884 + ABZR87_RS16840 0.28 -1.7 133,884 + ABZR87_RS16840 0.28 +1.3 133,884 + ABZR87_RS16840 0.28 +0.8 133,884 + ABZR87_RS16840 0.28 +1.6 133,929 + ABZR87_RS16840 0.44 -2.2 133,929 + ABZR87_RS16840 0.44 +1.1 133,929 + ABZR87_RS16840 0.44 -2.2 133,929 + ABZR87_RS16840 0.44 +1.1 133,930 - ABZR87_RS16840 0.44 -3.6 133,930 - ABZR87_RS16840 0.44 -0.6 133,930 - ABZR87_RS16840 0.44 -2.7 133,930 - ABZR87_RS16840 0.44 -0.6 133,930 - ABZR87_RS16840 0.44 +1.1 133,930 - ABZR87_RS16840 0.44 -1.0 133,939 + ABZR87_RS16840 0.47 +0.2 133,939 + ABZR87_RS16840 0.47 +1.8 133,939 + ABZR87_RS16840 0.47 -4.7 133,940 - ABZR87_RS16840 0.48 +0.7 133,940 - ABZR87_RS16840 0.48 -3.1 133,940 - ABZR87_RS16840 0.48 -1.2 133,963 + ABZR87_RS16840 0.56 -1.6 133,964 - ABZR87_RS16840 0.56 +0.4 133,978 - ABZR87_RS16840 0.61 +0.9 133,978 - ABZR87_RS16840 0.61 +0.2 133,978 - ABZR87_RS16840 0.61 -0.7 133,978 - ABZR87_RS16840 0.61 -1.6 134,083 + +1.0 134,087 + -1.1 134,088 - -1.9 134,128 + +1.1 134,128 + +0.7 134,128 + +0.7 134,128 + -2.1 134,128 + +3.0 134,128 + -1.1 134,128 + -1.2 134,128 + -0.1 134,128 + +0.9 134,128 + -3.6 134,128 + +1.0 134,129 + +0.5 134,129 - -2.8 134,129 - -0.6 134,129 - -3.5 134,129 - -2.3 134,129 - -2.3 134,129 - -1.0 134,129 - -2.5 134,129 - +1.2 134,132 + -2.1 134,132 + +0.8 134,132 + -1.9 134,132 + -1.4 134,132 + +1.1 134,133 - +1.3 134,133 - -0.8 134,371 + -0.4 134,664 + ABZR87_RS16845 0.87 +0.3 134,721 + +0.8 134,721 + +1.1 134,721 + -0.1 134,721 + +1.0 134,722 - +2.2 134,722 - -0.8 134,722 - -1.6 134,722 - -0.2 134,722 - +0.2 134,722 - -0.6 134,722 - +0.4 134,722 - -2.1 134,727 + +2.8 134,727 + -0.7 134,728 - -0.0 134,728 - +0.1 134,728 - -1.3 134,728 - +0.3 134,728 - -1.1 134,740 + +1.7 134,740 + -3.8 134,741 - -1.9 134,907 + +0.6 134,907 + -3.0 134,908 - -0.9 134,908 - -3.6 134,978 - +1.9 135,012 + -3.6 135,013 - -0.0 135,013 - -1.6 135,041 + +1.4 135,042 - +2.1 135,073 + -2.2 135,074 - +0.7 135,074 - -2.8 135,233 + ABZR87_RS16850 0.13 -2.9 135,233 + ABZR87_RS16850 0.13 +2.5 135,233 + ABZR87_RS16850 0.13 +2.2 135,233 + ABZR87_RS16850 0.13 +0.9 135,234 - ABZR87_RS16850 0.13 +0.2 135,234 - ABZR87_RS16850 0.13 -1.2 135,252 - ABZR87_RS16850 0.15 -0.4 135,329 + ABZR87_RS16850 0.20 -3.3 135,329 + ABZR87_RS16850 0.20 -3.0 135,329 + ABZR87_RS16850 0.20 +1.2 135,330 - ABZR87_RS16850 0.20 -2.9 135,368 + ABZR87_RS16850 0.23 -0.2 135,368 + ABZR87_RS16850 0.23 +0.8 135,368 + ABZR87_RS16850 0.23 -4.1 135,369 - ABZR87_RS16850 0.23 -0.3 135,369 - ABZR87_RS16850 0.23 +1.5 135,476 + ABZR87_RS16850 0.31 +0.1 135,477 - ABZR87_RS16850 0.31 +0.9 135,477 - ABZR87_RS16850 0.31 -3.2 135,568 + ABZR87_RS16850 0.37 +2.9 135,569 - ABZR87_RS16850 0.37 -2.6 135,569 - ABZR87_RS16850 0.37 +0.2 135,595 - ABZR87_RS16850 0.39 -1.8
Or see this region's nucleotide sequence