Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16795

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16785 and ABZR87_RS16790 are separated by 37 nucleotidesABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotidesABZR87_RS16795 and ABZR87_RS16800 are separated by 171 nucleotidesABZR87_RS16800 and ABZR87_RS16805 are separated by 147 nucleotides ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308 _RS16785 ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819 _RS16790 ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 ABZR87_RS16800: ABZR87_RS16800 - RidA family protein, at 125,612 to 126,010 _RS16800 ABZR87_RS16805: ABZR87_RS16805 - LysR family transcriptional regulator, at 126,158 to 127,072 _RS16805 Position (kb) 124 125 126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.214 kb on - strand, within ABZR87_RS16785at 124.244 kb on + strand, within ABZR87_RS16785at 124.306 kb on + strandat 124.306 kb on + strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.496 kb on + strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.761 kb on - strand, within ABZR87_RS16790at 124.772 kb on + strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.948 kb on - strandat 125.319 kb on + strand, within ABZR87_RS16795at 125.320 kb on - strand, within ABZR87_RS16795at 125.377 kb on - strand, within ABZR87_RS16795at 125.409 kb on + strandat 125.409 kb on + strandat 125.409 kb on + strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.568 kb on + strandat 125.569 kb on - strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.596 kb on - strandat 125.596 kb on - strandat 125.665 kb on - strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.950 kb on - strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.092 kb on + strandat 126.093 kb on - strandat 126.093 kb on - strandat 126.107 kb on + strandat 126.107 kb on + strandat 126.108 kb on - strandat 126.214 kb on + strandat 126.214 kb on + strandat 126.215 kb on - strandat 126.215 kb on - strandat 126.244 kb on + strandat 126.244 kb on + strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.350 kb on + strand, within ABZR87_RS16805at 126.350 kb on + strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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124,108 + ABZR87_RS16785 0.48 +0.8
124,108 + ABZR87_RS16785 0.48 +0.6
124,108 + ABZR87_RS16785 0.48 +2.7
124,108 + ABZR87_RS16785 0.48 +2.1
124,109 - ABZR87_RS16785 0.49 -0.0
124,109 - ABZR87_RS16785 0.49 +0.6
124,109 - ABZR87_RS16785 0.49 -0.7
124,168 + ABZR87_RS16785 0.64 -3.2
124,168 + ABZR87_RS16785 0.64 +0.3
124,168 + ABZR87_RS16785 0.64 +2.0
124,168 + ABZR87_RS16785 0.64 -0.9
124,168 + ABZR87_RS16785 0.64 +2.4
124,169 - ABZR87_RS16785 0.64 +0.2
124,169 - ABZR87_RS16785 0.64 -2.2
124,214 - ABZR87_RS16785 0.76 +2.0
124,244 + ABZR87_RS16785 0.83 +1.0
124,306 + -3.3
124,306 + +1.4
124,307 - -1.2
124,307 - -0.6
124,307 - +0.8
124,307 - +0.9
124,496 + ABZR87_RS16790 0.32 -4.1
124,497 - ABZR87_RS16790 0.32 -3.6
124,497 - ABZR87_RS16790 0.32 -0.4
124,638 - ABZR87_RS16790 0.62 -1.2
124,638 - ABZR87_RS16790 0.62 +0.4
124,638 - ABZR87_RS16790 0.62 +2.1
124,638 - ABZR87_RS16790 0.62 -0.3
124,638 - ABZR87_RS16790 0.62 -2.0
124,638 - ABZR87_RS16790 0.62 -3.4
124,639 + ABZR87_RS16790 0.62 -1.1
124,639 + ABZR87_RS16790 0.62 -2.7
124,639 + ABZR87_RS16790 0.62 +3.2
124,640 - ABZR87_RS16790 0.62 -0.4
124,640 - ABZR87_RS16790 0.62 +0.8
124,640 - ABZR87_RS16790 0.62 +2.3
124,640 - ABZR87_RS16790 0.62 +1.5
124,640 - ABZR87_RS16790 0.62 +0.5
124,640 - ABZR87_RS16790 0.62 +1.0
124,671 - ABZR87_RS16790 0.69 +0.1
124,671 - ABZR87_RS16790 0.69 +2.3
124,671 - ABZR87_RS16790 0.69 -0.7
124,760 + ABZR87_RS16790 0.87 +0.8
124,760 + ABZR87_RS16790 0.87 -0.6
124,760 + ABZR87_RS16790 0.87 +1.4
124,760 + ABZR87_RS16790 0.87 -0.5
124,761 - ABZR87_RS16790 0.88 +0.7
124,772 + -0.4
124,773 - +1.1
124,773 - -0.2
124,773 - -0.3
124,773 - -1.3
124,948 - -0.1
125,319 + ABZR87_RS16795 0.75 -4.1
125,320 - ABZR87_RS16795 0.75 -4.1
125,377 - ABZR87_RS16795 0.87 -2.9
125,409 + -1.8
125,409 + -1.2
125,409 + +0.3
125,410 - -0.5
125,410 - -2.6
125,410 - +1.3
125,568 + +1.4
125,569 - -1.5
125,595 + -1.0
125,595 + +1.2
125,595 + +3.0
125,596 - +0.6
125,596 - +2.7
125,665 - ABZR87_RS16800 0.13 -2.0
125,770 + ABZR87_RS16800 0.40 +1.5
125,770 + ABZR87_RS16800 0.40 +0.4
125,950 - ABZR87_RS16800 0.85 +1.0
125,964 + ABZR87_RS16800 0.88 -0.6
125,964 + ABZR87_RS16800 0.88 +1.1
125,964 + ABZR87_RS16800 0.88 -3.8
125,964 + ABZR87_RS16800 0.88 +0.2
125,965 - ABZR87_RS16800 0.88 +0.2
125,965 - ABZR87_RS16800 0.88 -3.2
126,071 + -2.5
126,071 + -2.0
126,071 + -2.0
126,071 + -0.2
126,072 - -3.3
126,072 - +0.5
126,072 - -0.5
126,072 - -3.1
126,072 - +1.3
126,072 - -0.4
126,072 - +1.2
126,072 - -1.4
126,072 - -1.8
126,092 + -2.3
126,093 - -3.5
126,093 - +0.5
126,107 + +1.6
126,107 + -0.2
126,108 - +0.4
126,214 + +0.9
126,214 + -1.1
126,215 - +1.9
126,215 - -1.6
126,244 + +0.8
126,244 + -2.4
126,245 - +1.6
126,245 - -1.9
126,245 - -1.4
126,245 - +2.2
126,350 + ABZR87_RS16805 0.21 +2.6
126,350 + ABZR87_RS16805 0.21 -0.2
126,351 - ABZR87_RS16805 0.21 -0.3
126,351 - ABZR87_RS16805 0.21 +0.2
126,351 - ABZR87_RS16805 0.21 -0.1
126,351 - ABZR87_RS16805 0.21 -2.9
126,353 + ABZR87_RS16805 0.21 -1.4
126,353 + ABZR87_RS16805 0.21 -0.8
126,353 + ABZR87_RS16805 0.21 -1.8
126,353 + ABZR87_RS16805 0.21 -1.4
126,353 + ABZR87_RS16805 0.21 +0.9
126,353 + ABZR87_RS16805 0.21 +0.1
126,354 - ABZR87_RS16805 0.21 -2.9
126,354 - ABZR87_RS16805 0.21 +0.5
126,354 - ABZR87_RS16805 0.21 +0.5
126,354 - ABZR87_RS16805 0.21 -3.5
126,397 + ABZR87_RS16805 0.26 -2.1
126,397 + ABZR87_RS16805 0.26 -0.2
126,398 - ABZR87_RS16805 0.26 -1.2
126,398 - ABZR87_RS16805 0.26 -0.3

Or see this region's nucleotide sequence