Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16710 and ABZR87_RS16715 are separated by 126 nucleotides ABZR87_RS16715 and ABZR87_RS16720 are separated by 302 nucleotides
ABZR87_RS16710: ABZR87_RS16710 - carbonic anhydrase, at 97,510 to 98,154
_RS16710
ABZR87_RS16715: ABZR87_RS16715 - SulP family inorganic anion transporter, at 98,281 to 99,852
_RS16715
ABZR87_RS16720: ABZR87_RS16720 - collagen-like triple helix repeat-containing protein, at 100,155 to 101,300
_RS16720
Position (kb) 98
99
100 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 97.299 kb on + strand at 97.300 kb on - strand at 97.300 kb on - strand at 97.318 kb on - strand at 97.345 kb on + strand at 97.345 kb on + strand at 97.346 kb on - strand at 97.346 kb on - strand at 97.346 kb on - strand at 97.359 kb on + strand at 97.360 kb on - strand at 97.360 kb on - strand at 97.400 kb on + strand at 97.400 kb on + strand at 97.400 kb on + strand at 97.400 kb on + strand at 97.400 kb on + strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.401 kb on - strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.506 kb on - strand at 97.506 kb on - strand at 97.622 kb on + strand, within ABZR87_RS16710 at 97.622 kb on + strand, within ABZR87_RS16710 at 97.688 kb on + strand, within ABZR87_RS16710 at 97.756 kb on + strand, within ABZR87_RS16710 at 97.756 kb on + strand, within ABZR87_RS16710 at 97.757 kb on - strand, within ABZR87_RS16710 at 97.757 kb on - strand, within ABZR87_RS16710 at 97.757 kb on - strand, within ABZR87_RS16710 at 97.757 kb on - strand, within ABZR87_RS16710 at 97.793 kb on + strand, within ABZR87_RS16710 at 97.793 kb on + strand, within ABZR87_RS16710 at 98.070 kb on + strand, within ABZR87_RS16710 at 98.078 kb on + strand, within ABZR87_RS16710 at 98.079 kb on - strand, within ABZR87_RS16710 at 98.079 kb on - strand, within ABZR87_RS16710 at 98.079 kb on - strand, within ABZR87_RS16710 at 98.152 kb on + strand at 98.152 kb on + strand at 98.153 kb on - strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.265 kb on + strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.266 kb on - strand at 98.614 kb on + strand, within ABZR87_RS16715 at 98.614 kb on + strand, within ABZR87_RS16715 at 98.614 kb on + strand, within ABZR87_RS16715 at 98.614 kb on + strand, within ABZR87_RS16715 at 98.615 kb on - strand, within ABZR87_RS16715 at 98.615 kb on - strand, within ABZR87_RS16715 at 98.615 kb on - strand, within ABZR87_RS16715 at 98.615 kb on - strand, within ABZR87_RS16715 at 98.846 kb on + strand, within ABZR87_RS16715 at 98.846 kb on + strand, within ABZR87_RS16715 at 98.847 kb on - strand, within ABZR87_RS16715 at 98.847 kb on - strand, within ABZR87_RS16715 at 98.847 kb on - strand, within ABZR87_RS16715 at 98.847 kb on - strand, within ABZR87_RS16715 at 98.847 kb on - strand, within ABZR87_RS16715 at 99.207 kb on + strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.243 kb on - strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.692 kb on - strand, within ABZR87_RS16715 at 99.855 kb on + strand at 99.855 kb on + strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.887 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.989 kb on + strand at 99.989 kb on + strand at 99.990 kb on - strand at 100.074 kb on + strand at 100.105 kb on + strand at 100.106 kb on - strand at 100.134 kb on + strand at 100.535 kb on + strand, within ABZR87_RS16720
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 97,299 + +0.9 97,300 - -2.4 97,300 - +0.4 97,318 - -0.8 97,345 + -1.1 97,345 + -1.6 97,346 - +0.3 97,346 - -3.2 97,346 - +1.8 97,359 + -2.7 97,360 - +0.4 97,360 - -1.9 97,400 + +2.3 97,400 + -2.7 97,400 + +1.9 97,400 + -1.0 97,400 + +0.5 97,401 - +1.5 97,401 - -2.7 97,401 - +0.9 97,401 - -1.4 97,401 - -0.3 97,401 - -1.0 97,401 - -0.3 97,401 - -1.3 97,401 - +1.6 97,505 + +1.6 97,505 + -0.2 97,506 - +1.8 97,506 - -1.4 97,622 + ABZR87_RS16710 0.17 -1.5 97,622 + ABZR87_RS16710 0.17 +2.3 97,688 + ABZR87_RS16710 0.28 +1.0 97,756 + ABZR87_RS16710 0.38 -2.7 97,756 + ABZR87_RS16710 0.38 -0.2 97,757 - ABZR87_RS16710 0.38 -2.4 97,757 - ABZR87_RS16710 0.38 -0.8 97,757 - ABZR87_RS16710 0.38 -0.9 97,757 - ABZR87_RS16710 0.38 +1.8 97,793 + ABZR87_RS16710 0.44 -2.0 97,793 + ABZR87_RS16710 0.44 -1.3 98,070 + ABZR87_RS16710 0.87 -2.0 98,078 + ABZR87_RS16710 0.88 +1.1 98,079 - ABZR87_RS16710 0.88 -1.0 98,079 - ABZR87_RS16710 0.88 +0.1 98,079 - ABZR87_RS16710 0.88 -3.5 98,152 + -3.8 98,152 + -2.4 98,153 - +0.2 98,265 + +1.8 98,265 + -3.4 98,265 + -1.6 98,265 + -0.1 98,265 + +0.1 98,265 + +1.1 98,265 + -0.5 98,265 + -3.3 98,265 + -0.9 98,265 + +0.3 98,265 + +0.7 98,266 - -1.5 98,266 - +0.6 98,266 - -4.0 98,266 - -3.4 98,266 - +0.6 98,266 - +0.9 98,266 - -3.6 98,266 - +1.6 98,266 - -2.8 98,266 - +1.1 98,266 - -2.3 98,266 - -0.4 98,266 - -1.8 98,266 - +0.3 98,266 - +1.7 98,266 - +1.1 98,614 + ABZR87_RS16715 0.21 +2.3 98,614 + ABZR87_RS16715 0.21 +0.5 98,614 + ABZR87_RS16715 0.21 +1.7 98,614 + ABZR87_RS16715 0.21 -1.5 98,615 - ABZR87_RS16715 0.21 -3.8 98,615 - ABZR87_RS16715 0.21 +0.9 98,615 - ABZR87_RS16715 0.21 -0.4 98,615 - ABZR87_RS16715 0.21 +1.8 98,846 + ABZR87_RS16715 0.36 +0.6 98,846 + ABZR87_RS16715 0.36 -2.4 98,847 - ABZR87_RS16715 0.36 +0.7 98,847 - ABZR87_RS16715 0.36 -2.3 98,847 - ABZR87_RS16715 0.36 -2.1 98,847 - ABZR87_RS16715 0.36 -2.0 98,847 - ABZR87_RS16715 0.36 +1.7 99,207 + ABZR87_RS16715 0.59 +1.0 99,208 - ABZR87_RS16715 0.59 -1.3 99,208 - ABZR87_RS16715 0.59 +0.1 99,242 + ABZR87_RS16715 0.61 -0.1 99,242 + ABZR87_RS16715 0.61 -2.0 99,242 + ABZR87_RS16715 0.61 +1.6 99,242 + ABZR87_RS16715 0.61 +0.7 99,243 - ABZR87_RS16715 0.61 +1.7 99,376 + ABZR87_RS16715 0.70 +1.6 99,376 + ABZR87_RS16715 0.70 -0.8 99,376 + ABZR87_RS16715 0.70 +1.7 99,377 - ABZR87_RS16715 0.70 +0.6 99,377 - ABZR87_RS16715 0.70 -0.0 99,635 - ABZR87_RS16715 0.86 +2.0 99,635 - ABZR87_RS16715 0.86 -2.9 99,635 - ABZR87_RS16715 0.86 +0.8 99,635 - ABZR87_RS16715 0.86 +3.7 99,635 - ABZR87_RS16715 0.86 -2.7 99,691 + ABZR87_RS16715 0.90 +0.7 99,691 + ABZR87_RS16715 0.90 +0.3 99,691 + ABZR87_RS16715 0.90 -1.1 99,691 + ABZR87_RS16715 0.90 -3.2 99,691 + ABZR87_RS16715 0.90 -2.1 99,691 + ABZR87_RS16715 0.90 -1.0 99,691 + ABZR87_RS16715 0.90 +0.2 99,691 + ABZR87_RS16715 0.90 -1.9 99,692 - ABZR87_RS16715 0.90 -0.1 99,855 + -0.2 99,855 + -1.2 99,856 - -3.8 99,856 - -0.1 99,856 - -1.0 99,856 - -0.3 99,856 - +0.8 99,856 - -1.5 99,887 + -2.1 99,907 + +1.2 99,907 + -3.0 99,907 + +1.0 99,907 + -2.1 99,989 + +0.9 99,989 + -0.5 99,990 - +0.4 100,074 + +2.2 100,105 + +0.4 100,106 - +0.1 100,134 + -1.0 100,535 + ABZR87_RS16720 0.33 -2.8
Or see this region's nucleotide sequence