Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16570 and ABZR87_RS16575 are separated by 46 nucleotides ABZR87_RS16575 and ABZR87_RS16580 are separated by 2 nucleotides ABZR87_RS16580 and ABZR87_RS16585 overlap by 17 nucleotides ABZR87_RS16585 and ABZR87_RS16590 are separated by 63 nucleotides
ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469
_RS16570
ABZR87_RS16575: ABZR87_RS16575 - ABC transporter ATP-binding protein, at 67,516 to 68,268
_RS16575
ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125
_RS16580
ABZR87_RS16585: ABZR87_RS16585 - OsmC family protein, at 69,109 to 69,699
_RS16585
ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601
_RS16590
Position (kb) 68
69
70 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 67.315 kb on + strand, within ABZR87_RS16570 at 67.315 kb on + strand, within ABZR87_RS16570 at 67.405 kb on + strand at 67.405 kb on + strand at 67.406 kb on - strand at 67.539 kb on - strand at 67.539 kb on - strand at 67.539 kb on - strand at 67.596 kb on + strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.617 kb on - strand, within ABZR87_RS16575 at 67.724 kb on + strand, within ABZR87_RS16575 at 67.725 kb on - strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.208 kb on - strand at 68.338 kb on + strand at 68.338 kb on + strand at 68.338 kb on + strand at 68.339 kb on - strand at 68.620 kb on + strand, within ABZR87_RS16580 at 68.620 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.633 kb on - strand, within ABZR87_RS16580 at 69.046 kb on - strand at 69.243 kb on + strand, within ABZR87_RS16585 at 69.329 kb on + strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.506 kb on + strand, within ABZR87_RS16585 at 69.507 kb on - strand, within ABZR87_RS16585 at 69.559 kb on + strand, within ABZR87_RS16585 at 69.656 kb on - strand at 69.681 kb on - strand at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 70.061 kb on + strand, within ABZR87_RS16590 at 70.062 kb on - strand, within ABZR87_RS16590
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 67,315 + ABZR87_RS16570 0.82 +1.6 67,315 + ABZR87_RS16570 0.82 -2.5 67,405 + -0.9 67,405 + +0.3 67,406 - -2.8 67,539 - -2.8 67,539 - +0.6 67,539 - +0.7 67,596 + ABZR87_RS16575 0.11 +0.9 67,597 - ABZR87_RS16575 0.11 +2.6 67,597 - ABZR87_RS16575 0.11 +0.3 67,597 - ABZR87_RS16575 0.11 -3.3 67,616 + ABZR87_RS16575 0.13 -0.1 67,616 + ABZR87_RS16575 0.13 -0.0 67,616 + ABZR87_RS16575 0.13 -1.3 67,616 + ABZR87_RS16575 0.13 +1.3 67,617 - ABZR87_RS16575 0.13 -0.7 67,724 + ABZR87_RS16575 0.28 -1.9 67,725 - ABZR87_RS16575 0.28 +0.8 67,889 + ABZR87_RS16575 0.50 +0.3 67,889 + ABZR87_RS16575 0.50 -3.3 67,889 + ABZR87_RS16575 0.50 -0.1 68,101 - ABZR87_RS16575 0.78 +0.6 68,101 - ABZR87_RS16575 0.78 +2.5 68,101 - ABZR87_RS16575 0.78 -2.6 68,208 - -3.9 68,338 + +2.3 68,338 + +1.2 68,338 + +1.2 68,339 - +0.4 68,620 + ABZR87_RS16580 0.41 +0.6 68,620 + ABZR87_RS16580 0.41 +2.5 68,632 + ABZR87_RS16580 0.42 +0.0 68,632 + ABZR87_RS16580 0.42 -0.2 68,632 + ABZR87_RS16580 0.42 -2.6 68,633 - ABZR87_RS16580 0.42 +3.4 69,046 - -3.4 69,243 + ABZR87_RS16585 0.23 -1.2 69,329 + ABZR87_RS16585 0.37 -0.3 69,330 - ABZR87_RS16585 0.37 -1.2 69,330 - ABZR87_RS16585 0.37 -3.2 69,444 + ABZR87_RS16585 0.57 -3.4 69,444 + ABZR87_RS16585 0.57 -3.3 69,444 + ABZR87_RS16585 0.57 +0.4 69,444 + ABZR87_RS16585 0.57 -2.4 69,445 - ABZR87_RS16585 0.57 -3.1 69,445 - ABZR87_RS16585 0.57 -1.0 69,445 - ABZR87_RS16585 0.57 -1.9 69,506 + ABZR87_RS16585 0.67 +2.6 69,507 - ABZR87_RS16585 0.67 -1.7 69,559 + ABZR87_RS16585 0.76 +0.4 69,656 - +0.6 69,681 - -0.0 69,986 + ABZR87_RS16590 0.12 +3.2 69,986 + ABZR87_RS16590 0.12 +1.7 69,986 + ABZR87_RS16590 0.12 -3.6 69,986 + ABZR87_RS16590 0.12 +0.4 69,986 + ABZR87_RS16590 0.12 -0.2 69,987 - ABZR87_RS16590 0.12 -2.2 69,987 - ABZR87_RS16590 0.12 -2.8 69,987 - ABZR87_RS16590 0.12 -1.5 69,987 - ABZR87_RS16590 0.12 +0.1 69,993 - ABZR87_RS16590 0.13 +1.5 69,993 - ABZR87_RS16590 0.13 -0.8 69,993 - ABZR87_RS16590 0.13 -1.1 70,061 + ABZR87_RS16590 0.16 -2.0 70,062 - ABZR87_RS16590 0.16 +1.6
Or see this region's nucleotide sequence