Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15710

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15705 and ABZR87_RS15710 are separated by 150 nucleotidesABZR87_RS15710 and ABZR87_RS15715 are separated by 41 nucleotides ABZR87_RS15705: ABZR87_RS15705 - UvrD-helicase domain-containing protein, at 3,313,483 to 3,315,843 _RS15705 ABZR87_RS15710: ABZR87_RS15710 - valine--tRNA ligase, at 3,315,994 to 3,318,870 _RS15710 ABZR87_RS15715: ABZR87_RS15715 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,318,912 to 3,319,784 _RS15715 Position (kb) 3315 3316 3317 3318 3319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3315.075 kb on - strand, within ABZR87_RS15705at 3315.075 kb on - strand, within ABZR87_RS15705at 3315.164 kb on + strand, within ABZR87_RS15705at 3315.180 kb on + strand, within ABZR87_RS15705at 3315.225 kb on - strand, within ABZR87_RS15705at 3315.264 kb on - strand, within ABZR87_RS15705at 3315.323 kb on + strand, within ABZR87_RS15705at 3315.923 kb on + strandat 3315.923 kb on + strandat 3315.925 kb on + strandat 3315.925 kb on + strandat 3319.029 kb on + strand, within ABZR87_RS15715at 3319.029 kb on + strand, within ABZR87_RS15715at 3319.125 kb on + strand, within ABZR87_RS15715at 3319.125 kb on + strand, within ABZR87_RS15715at 3319.125 kb on + strand, within ABZR87_RS15715at 3319.215 kb on + strand, within ABZR87_RS15715at 3319.359 kb on + strand, within ABZR87_RS15715at 3319.359 kb on + strand, within ABZR87_RS15715at 3319.360 kb on - strand, within ABZR87_RS15715at 3319.369 kb on - strand, within ABZR87_RS15715at 3319.369 kb on - strand, within ABZR87_RS15715at 3319.369 kb on - strand, within ABZR87_RS15715at 3319.423 kb on - strand, within ABZR87_RS15715at 3319.539 kb on + strand, within ABZR87_RS15715at 3319.539 kb on + strand, within ABZR87_RS15715at 3319.539 kb on + strand, within ABZR87_RS15715at 3319.539 kb on + strand, within ABZR87_RS15715at 3319.539 kb on + strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.540 kb on - strand, within ABZR87_RS15715at 3319.662 kb on + strand, within ABZR87_RS15715at 3319.662 kb on + strand, within ABZR87_RS15715at 3319.662 kb on + strand, within ABZR87_RS15715at 3319.663 kb on - strand, within ABZR87_RS15715at 3319.678 kb on - strand, within ABZR87_RS15715at 3319.701 kb on + strandat 3319.702 kb on - strandat 3319.702 kb on - strandat 3319.806 kb on - strandat 3319.830 kb on + strandat 3319.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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3,315,075 - ABZR87_RS15705 0.67 -0.7
3,315,075 - ABZR87_RS15705 0.67 -0.4
3,315,164 + ABZR87_RS15705 0.71 -0.4
3,315,180 + ABZR87_RS15705 0.72 +1.0
3,315,225 - ABZR87_RS15705 0.74 +0.3
3,315,264 - ABZR87_RS15705 0.75 +1.0
3,315,323 + ABZR87_RS15705 0.78 -1.3
3,315,923 + -1.1
3,315,923 + -2.4
3,315,925 + +0.2
3,315,925 + -0.4
3,319,029 + ABZR87_RS15715 0.13 -0.3
3,319,029 + ABZR87_RS15715 0.13 +0.7
3,319,125 + ABZR87_RS15715 0.24 +0.2
3,319,125 + ABZR87_RS15715 0.24 +0.4
3,319,125 + ABZR87_RS15715 0.24 +1.1
3,319,215 + ABZR87_RS15715 0.35 -0.7
3,319,359 + ABZR87_RS15715 0.51 -1.0
3,319,359 + ABZR87_RS15715 0.51 +0.1
3,319,360 - ABZR87_RS15715 0.51 +0.9
3,319,369 - ABZR87_RS15715 0.52 -2.3
3,319,369 - ABZR87_RS15715 0.52 -0.7
3,319,369 - ABZR87_RS15715 0.52 +0.3
3,319,423 - ABZR87_RS15715 0.59 -0.4
3,319,539 + ABZR87_RS15715 0.72 -0.7
3,319,539 + ABZR87_RS15715 0.72 -0.9
3,319,539 + ABZR87_RS15715 0.72 -2.2
3,319,539 + ABZR87_RS15715 0.72 +1.4
3,319,539 + ABZR87_RS15715 0.72 -1.5
3,319,540 - ABZR87_RS15715 0.72 +0.9
3,319,540 - ABZR87_RS15715 0.72 +0.7
3,319,540 - ABZR87_RS15715 0.72 -0.9
3,319,540 - ABZR87_RS15715 0.72 +0.5
3,319,540 - ABZR87_RS15715 0.72 -0.8
3,319,540 - ABZR87_RS15715 0.72 -2.1
3,319,662 + ABZR87_RS15715 0.86 +1.2
3,319,662 + ABZR87_RS15715 0.86 -1.6
3,319,662 + ABZR87_RS15715 0.86 +1.8
3,319,663 - ABZR87_RS15715 0.86 +1.5
3,319,678 - ABZR87_RS15715 0.88 -1.6
3,319,701 + -0.5
3,319,702 - +1.2
3,319,702 - -0.6
3,319,806 - -3.6
3,319,830 + -1.3
3,319,831 - +1.8

Or see this region's nucleotide sequence