Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15605

Experiment: soil EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotidesABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotides ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671 _RS15600 ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044 _RS15605 ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964 _RS15610 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -3 -2 -1 0 1at 3290.588 kb on - strandat 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3291.042 kb on + strandat 3291.043 kb on - strandat 3291.105 kb on - strandat 3291.155 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
remove
3,290,588 - -3.1
3,290,838 - ABZR87_RS15605 0.46 -0.4
3,290,838 - ABZR87_RS15605 0.46 -2.1
3,290,838 - ABZR87_RS15605 0.46 -3.2
3,290,838 - ABZR87_RS15605 0.46 -2.0
3,291,042 + -1.3
3,291,043 - -1.1
3,291,105 - -1.3
3,291,155 - +0.1

Or see this region's nucleotide sequence