Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15600

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15590 and ABZR87_RS15595 are separated by 739 nucleotidesABZR87_RS15595 and ABZR87_RS15600 are separated by 106 nucleotidesABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotidesABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotides ABZR87_RS15590: ABZR87_RS15590 - DUF2957 domain-containing protein, at 3,285,818 to 3,287,413 _RS15590 ABZR87_RS15595: ABZR87_RS15595 - tRNA-Ile, at 3,288,153 to 3,288,240 _RS15595 ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671 _RS15600 ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044 _RS15605 ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964 _RS15610 Position (kb) 3288 3289 3290 3291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3287.350 kb on + strandat 3287.366 kb on + strandat 3287.366 kb on + strandat 3287.367 kb on - strandat 3287.407 kb on + strandat 3287.408 kb on - strandat 3287.408 kb on - strandat 3287.439 kb on - strandat 3287.481 kb on + strandat 3287.482 kb on - strandat 3287.598 kb on + strandat 3287.642 kb on + strandat 3287.642 kb on + strandat 3287.642 kb on + strandat 3287.642 kb on + strandat 3287.643 kb on - strandat 3287.755 kb on + strandat 3287.755 kb on + strandat 3287.756 kb on - strandat 3287.756 kb on - strandat 3287.778 kb on + strandat 3287.779 kb on - strandat 3287.783 kb on + strandat 3287.790 kb on + strandat 3287.794 kb on + strandat 3287.794 kb on + strandat 3287.794 kb on + strandat 3287.794 kb on + strandat 3287.795 kb on - strandat 3287.795 kb on - strandat 3287.798 kb on + strandat 3287.805 kb on - strandat 3287.833 kb on - strandat 3287.833 kb on - strandat 3287.840 kb on - strandat 3287.951 kb on - strandat 3287.996 kb on + strandat 3288.004 kb on + strandat 3288.019 kb on - strandat 3288.020 kb on + strandat 3288.021 kb on - strandat 3288.051 kb on + strandat 3288.051 kb on + strandat 3288.067 kb on + strandat 3288.068 kb on - strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.099 kb on + strandat 3288.100 kb on - strandat 3288.100 kb on - strandat 3288.100 kb on - strandat 3288.100 kb on - strandat 3288.100 kb on - strandat 3288.100 kb on - strandat 3288.273 kb on - strandat 3290.588 kb on - strandat 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3291.042 kb on + strandat 3291.043 kb on - strandat 3291.105 kb on - strandat 3291.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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3,287,350 + -0.9
3,287,366 + +1.2
3,287,366 + -2.0
3,287,367 - -0.7
3,287,407 + -1.5
3,287,408 - +1.4
3,287,408 - +2.2
3,287,439 - +7.5
3,287,481 + -2.7
3,287,482 - +6.3
3,287,598 + -0.3
3,287,642 + -0.9
3,287,642 + +1.6
3,287,642 + -0.6
3,287,642 + -2.8
3,287,643 - +3.6
3,287,755 + -2.3
3,287,755 + -0.7
3,287,756 - +1.9
3,287,756 - +1.5
3,287,778 + +0.8
3,287,779 - +3.5
3,287,783 + -2.6
3,287,790 + -0.9
3,287,794 + -0.7
3,287,794 + -2.1
3,287,794 + -1.3
3,287,794 + -3.5
3,287,795 - +1.3
3,287,795 - -2.3
3,287,798 + -3.2
3,287,805 - +0.1
3,287,833 - -2.6
3,287,833 - +1.0
3,287,840 - -1.6
3,287,951 - -1.4
3,287,996 + +0.4
3,288,004 + -1.9
3,288,019 - -2.9
3,288,020 + +0.1
3,288,021 - +2.0
3,288,051 + -3.5
3,288,051 + -2.4
3,288,067 + -1.2
3,288,068 - +1.4
3,288,099 + -1.4
3,288,099 + +1.2
3,288,099 + -4.1
3,288,099 + -0.6
3,288,099 + -1.1
3,288,099 + -3.4
3,288,099 + -1.0
3,288,100 - -0.7
3,288,100 - +1.0
3,288,100 - +0.8
3,288,100 - +0.2
3,288,100 - +0.9
3,288,100 - +2.1
3,288,273 - -1.6
3,290,588 - -3.1
3,290,838 - ABZR87_RS15605 0.46 -0.4
3,290,838 - ABZR87_RS15605 0.46 -2.1
3,290,838 - ABZR87_RS15605 0.46 -3.2
3,290,838 - ABZR87_RS15605 0.46 -2.0
3,291,042 + -1.3
3,291,043 - -1.1
3,291,105 - -1.3
3,291,155 - +0.1

Or see this region's nucleotide sequence