Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15130

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15125 and ABZR87_RS15130 are separated by 76 nucleotides ABZR87_RS15125: ABZR87_RS15125 - class 1 fructose-bisphosphatase, at 3,194,815 to 3,195,831 _RS15125 ABZR87_RS15130: ABZR87_RS15130 - tRNA-Thr, at 3,195,908 to 3,195,983 _RS15130 Position (kb) 3195 3196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3195.829 kb on + strandat 3195.842 kb on + strandat 3195.842 kb on + strandat 3195.843 kb on - strandat 3196.035 kb on - strandat 3196.035 kb on - strandat 3196.046 kb on - strandat 3196.074 kb on + strandat 3196.075 kb on - strandat 3196.086 kb on + strandat 3196.086 kb on + strandat 3196.122 kb on + strandat 3196.122 kb on + strandat 3196.123 kb on - strandat 3196.149 kb on - strandat 3196.149 kb on - strandat 3196.203 kb on + strandat 3196.203 kb on + strandat 3196.223 kb on + strandat 3196.224 kb on - strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.310 kb on + strandat 3196.311 kb on - strandat 3196.339 kb on + strandat 3196.340 kb on - strandat 3196.340 kb on - strandat 3196.359 kb on + strandat 3196.360 kb on - strandat 3196.360 kb on - strandat 3196.376 kb on - strandat 3196.395 kb on - strandat 3196.541 kb on + strandat 3196.550 kb on + strandat 3196.550 kb on + strandat 3196.551 kb on - strandat 3196.650 kb on - strandat 3196.695 kb on + strandat 3196.696 kb on - strandat 3196.696 kb on - strandat 3196.696 kb on - strandat 3196.731 kb on + strandat 3196.731 kb on + strandat 3196.732 kb on - strandat 3196.760 kb on + strandat 3196.760 kb on + strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.770 kb on + strandat 3196.770 kb on + strandat 3196.771 kb on - strandat 3196.816 kb on - strandat 3196.868 kb on + strandat 3196.868 kb on + strandat 3196.868 kb on + strandat 3196.868 kb on + strandat 3196.869 kb on - strandat 3196.869 kb on - strandat 3196.869 kb on - strandat 3196.869 kb on - strandat 3196.869 kb on - strandat 3196.869 kb on - strandat 3196.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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3,195,829 + +1.6
3,195,842 + +0.3
3,195,842 + -0.7
3,195,843 - -2.9
3,196,035 - -3.1
3,196,035 - -2.6
3,196,046 - -1.5
3,196,074 + -1.7
3,196,075 - +1.5
3,196,086 + +1.7
3,196,086 + +2.3
3,196,122 + +0.3
3,196,122 + +1.3
3,196,123 - +1.1
3,196,149 - +0.1
3,196,149 - -2.8
3,196,203 + +0.0
3,196,203 + +0.2
3,196,223 + +0.8
3,196,224 - -0.7
3,196,251 + -2.2
3,196,251 + -1.1
3,196,251 + -1.3
3,196,251 + +0.1
3,196,251 + -2.3
3,196,310 + -3.0
3,196,311 - -3.3
3,196,339 + +1.7
3,196,340 - -1.8
3,196,340 - -1.4
3,196,359 + +0.1
3,196,360 - +0.5
3,196,360 - +1.1
3,196,376 - -1.4
3,196,395 - -2.4
3,196,541 + -1.6
3,196,550 + +0.2
3,196,550 + -1.4
3,196,551 - +0.5
3,196,650 - -0.4
3,196,695 + +1.0
3,196,696 - -0.8
3,196,696 - +1.6
3,196,696 - -3.1
3,196,731 + +1.1
3,196,731 + +1.0
3,196,732 - +1.4
3,196,760 + -3.7
3,196,760 + -1.4
3,196,761 - +0.5
3,196,761 - -0.7
3,196,761 - +0.3
3,196,770 + -0.0
3,196,770 + +2.5
3,196,771 - -2.3
3,196,816 - -2.4
3,196,868 + +0.6
3,196,868 + -0.7
3,196,868 + -1.4
3,196,868 + +2.0
3,196,869 - +0.2
3,196,869 - +0.4
3,196,869 - +0.6
3,196,869 - -0.9
3,196,869 - +1.4
3,196,869 - -2.7
3,196,962 - +0.9

Or see this region's nucleotide sequence