Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14115

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14110 and ABZR87_RS14115 are separated by 145 nucleotidesABZR87_RS14115 and ABZR87_RS14120 are separated by 128 nucleotidesABZR87_RS14120 and ABZR87_RS14125 are separated by 108 nucleotides ABZR87_RS14110: ABZR87_RS14110 - dihydropteroate synthase, at 2,978,685 to 2,979,548 _RS14110 ABZR87_RS14115: ABZR87_RS14115 - ATP-dependent zinc metalloprotease FtsH, at 2,979,694 to 2,981,580 _RS14115 ABZR87_RS14120: ABZR87_RS14120 - RlmE family RNA methyltransferase, at 2,981,709 to 2,982,374 _RS14120 ABZR87_RS14125: ABZR87_RS14125 - YhbY family RNA-binding protein, at 2,982,483 to 2,982,983 _RS14125 Position (kb) 2979 2980 2981 2982Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2978.703 kb on + strandat 2978.703 kb on + strandat 2978.703 kb on + strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.682 kb on - strandat 2979.760 kb on - strandat 2980.028 kb on + strand, within ABZR87_RS14115at 2980.622 kb on + strand, within ABZR87_RS14115at 2980.623 kb on - strand, within ABZR87_RS14115at 2980.623 kb on - strand, within ABZR87_RS14115at 2981.261 kb on + strand, within ABZR87_RS14115at 2981.262 kb on - strand, within ABZR87_RS14115at 2981.265 kb on - strand, within ABZR87_RS14115at 2981.409 kb on + strandat 2981.595 kb on - strandat 2981.625 kb on + strandat 2981.625 kb on + strandat 2981.626 kb on - strandat 2981.626 kb on - strandat 2981.626 kb on - strandat 2981.701 kb on - strandat 2982.402 kb on + strandat 2982.403 kb on - strandat 2982.441 kb on - strandat 2982.441 kb on - strandat 2982.441 kb on - strandat 2982.443 kb on + strandat 2982.478 kb on + strandat 2982.483 kb on - strandat 2982.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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2,978,703 + +0.0
2,978,703 + -1.8
2,978,703 + -3.2
2,979,564 - +1.1
2,979,564 - +0.9
2,979,564 - -0.5
2,979,564 - -2.1
2,979,682 - -0.8
2,979,760 - -2.4
2,980,028 + ABZR87_RS14115 0.18 -4.1
2,980,622 + ABZR87_RS14115 0.49 -3.0
2,980,623 - ABZR87_RS14115 0.49 -2.7
2,980,623 - ABZR87_RS14115 0.49 -0.7
2,981,261 + ABZR87_RS14115 0.83 -4.4
2,981,262 - ABZR87_RS14115 0.83 -4.3
2,981,265 - ABZR87_RS14115 0.83 -0.1
2,981,409 + -0.3
2,981,595 - +2.3
2,981,625 + -1.8
2,981,625 + -2.6
2,981,626 - -2.6
2,981,626 - -3.3
2,981,626 - +3.2
2,981,701 - -0.3
2,982,402 + +3.3
2,982,403 - -1.0
2,982,441 - +0.7
2,982,441 - -0.1
2,982,441 - -2.6
2,982,443 + -1.9
2,982,478 + +0.7
2,982,483 - +1.1
2,982,483 - -2.1

Or see this region's nucleotide sequence