Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10120

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10110 and ABZR87_RS10115 are separated by 3 nucleotidesABZR87_RS10115 and ABZR87_RS10120 are separated by 190 nucleotidesABZR87_RS10120 and ABZR87_RS10125 are separated by 115 nucleotidesABZR87_RS10125 and ABZR87_RS10130 are separated by 190 nucleotides ABZR87_RS10110: ABZR87_RS10110 - SAM-dependent methyltransferase, at 2,148,694 to 2,149,425 _RS10110 ABZR87_RS10115: ABZR87_RS10115 - Maf-like protein, at 2,149,429 to 2,150,025 _RS10115 ABZR87_RS10120: ABZR87_RS10120 - YceD family protein, at 2,150,216 to 2,150,752 _RS10120 ABZR87_RS10125: ABZR87_RS10125 - 50S ribosomal protein L32, at 2,150,868 to 2,151,047 _RS10125 ABZR87_RS10130: ABZR87_RS10130 - phosphate acyltransferase PlsX, at 2,151,238 to 2,152,299 _RS10130 Position (kb) 2150 2151Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2149.276 kb on + strand, within ABZR87_RS10110at 2149.314 kb on - strand, within ABZR87_RS10110at 2149.314 kb on - strand, within ABZR87_RS10110at 2149.390 kb on + strandat 2149.390 kb on + strandat 2149.390 kb on + strandat 2149.390 kb on + strandat 2149.390 kb on + strandat 2149.391 kb on - strandat 2149.391 kb on - strandat 2149.391 kb on - strandat 2149.395 kb on + strandat 2149.395 kb on + strandat 2149.396 kb on - strandat 2149.409 kb on + strandat 2149.409 kb on + strandat 2149.409 kb on + strandat 2149.410 kb on - strandat 2149.410 kb on - strandat 2149.416 kb on + strandat 2149.416 kb on + strandat 2149.417 kb on - strandat 2150.025 kb on - strandat 2150.026 kb on - strandat 2150.026 kb on - strandat 2150.088 kb on + strandat 2150.088 kb on + strandat 2150.089 kb on - strandat 2150.204 kb on + strandat 2150.204 kb on + strandat 2150.204 kb on + strandat 2150.205 kb on - strandat 2150.344 kb on + strand, within ABZR87_RS10120at 2150.481 kb on - strand, within ABZR87_RS10120at 2150.481 kb on - strand, within ABZR87_RS10120at 2150.764 kb on + strandat 2150.764 kb on + strandat 2150.785 kb on + strandat 2150.785 kb on + strandat 2151.171 kb on + strandat 2151.171 kb on + strandat 2151.184 kb on - strandat 2151.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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2,149,276 + ABZR87_RS10110 0.80 -0.8
2,149,314 - ABZR87_RS10110 0.85 +0.9
2,149,314 - ABZR87_RS10110 0.85 -2.2
2,149,390 + +1.7
2,149,390 + -2.6
2,149,390 + +0.1
2,149,390 + +1.5
2,149,390 + +0.4
2,149,391 - -1.5
2,149,391 - -1.7
2,149,391 - -0.2
2,149,395 + +0.3
2,149,395 + -1.2
2,149,396 - -1.3
2,149,409 + +2.1
2,149,409 + +0.7
2,149,409 + +0.8
2,149,410 - +0.5
2,149,410 - +0.5
2,149,416 + +0.4
2,149,416 + +1.6
2,149,417 - -0.7
2,150,025 - -2.5
2,150,026 - -2.7
2,150,026 - +0.3
2,150,088 + -0.7
2,150,088 + +1.9
2,150,089 - +0.1
2,150,204 + -3.6
2,150,204 + -2.6
2,150,204 + +2.3
2,150,205 - +2.4
2,150,344 + ABZR87_RS10120 0.24 -1.9
2,150,481 - ABZR87_RS10120 0.49 +0.6
2,150,481 - ABZR87_RS10120 0.49 +1.1
2,150,764 + -1.2
2,150,764 + -1.0
2,150,785 + +0.1
2,150,785 + -0.7
2,151,171 + +1.4
2,151,171 + +2.8
2,151,184 - -0.8
2,151,184 - -0.4

Or see this region's nucleotide sequence