Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09305 and ABZR87_RS09310 are separated by 233 nucleotides ABZR87_RS09310 and ABZR87_RS09315 are separated by 7 nucleotides ABZR87_RS09315 and ABZR87_RS09320 are separated by 10 nucleotides
ABZR87_RS09305: ABZR87_RS09305 - purine nucleoside permease, at 1,971,032 to 1,972,081
_RS09305
ABZR87_RS09310: ABZR87_RS09310 - TonB-dependent siderophore receptor, at 1,972,315 to 1,974,423
_RS09310
ABZR87_RS09315: ABZR87_RS09315 - slipin family protein, at 1,974,431 to 1,975,189
_RS09315
ABZR87_RS09320: ABZR87_RS09320 - nodulation protein NfeD, at 1,975,200 to 1,976,579
_RS09320
Position (kb) 1972
1973
1974
1975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.501 kb on - strand, within ABZR87_RS09305 at 1971.506 kb on + strand, within ABZR87_RS09305 at 1971.507 kb on - strand, within ABZR87_RS09305 at 1971.555 kb on - strand, within ABZR87_RS09305 at 1971.602 kb on + strand, within ABZR87_RS09305 at 1971.602 kb on + strand, within ABZR87_RS09305 at 1971.603 kb on - strand, within ABZR87_RS09305 at 1971.603 kb on - strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.666 kb on - strand, within ABZR87_RS09305 at 1971.671 kb on + strand, within ABZR87_RS09305 at 1971.803 kb on + strand, within ABZR87_RS09305 at 1971.803 kb on + strand, within ABZR87_RS09305 at 1971.804 kb on - strand, within ABZR87_RS09305 at 1971.804 kb on - strand, within ABZR87_RS09305 at 1971.927 kb on - strand, within ABZR87_RS09305 at 1971.927 kb on - strand, within ABZR87_RS09305 at 1971.962 kb on + strand, within ABZR87_RS09305 at 1971.963 kb on - strand, within ABZR87_RS09305 at 1972.080 kb on - strand at 1972.080 kb on - strand at 1972.486 kb on - strand at 1972.486 kb on - strand at 1972.608 kb on + strand, within ABZR87_RS09310 at 1972.792 kb on + strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.795 kb on + strand, within ABZR87_RS09310 at 1972.795 kb on + strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.801 kb on + strand, within ABZR87_RS09310 at 1972.802 kb on - strand, within ABZR87_RS09310 at 1972.946 kb on - strand, within ABZR87_RS09310 at 1972.990 kb on - strand, within ABZR87_RS09310 at 1973.080 kb on + strand, within ABZR87_RS09310 at 1973.319 kb on + strand, within ABZR87_RS09310 at 1973.319 kb on + strand, within ABZR87_RS09310 at 1973.320 kb on - strand, within ABZR87_RS09310 at 1973.320 kb on - strand, within ABZR87_RS09310 at 1973.492 kb on - strand, within ABZR87_RS09310 at 1973.524 kb on + strand, within ABZR87_RS09310 at 1973.524 kb on + strand, within ABZR87_RS09310 at 1973.524 kb on + strand, within ABZR87_RS09310 at 1973.524 kb on + strand, within ABZR87_RS09310 at 1973.525 kb on - strand, within ABZR87_RS09310 at 1973.525 kb on - strand, within ABZR87_RS09310 at 1973.605 kb on + strand, within ABZR87_RS09310 at 1973.606 kb on - strand, within ABZR87_RS09310 at 1973.663 kb on - strand, within ABZR87_RS09310 at 1973.663 kb on - strand, within ABZR87_RS09310 at 1973.671 kb on + strand, within ABZR87_RS09310 at 1973.671 kb on + strand, within ABZR87_RS09310 at 1973.671 kb on + strand, within ABZR87_RS09310 at 1973.671 kb on + strand, within ABZR87_RS09310 at 1973.737 kb on + strand, within ABZR87_RS09310 at 1973.738 kb on - strand, within ABZR87_RS09310 at 1973.738 kb on - strand, within ABZR87_RS09310 at 1973.738 kb on - strand, within ABZR87_RS09310 at 1973.764 kb on + strand, within ABZR87_RS09310 at 1973.764 kb on + strand, within ABZR87_RS09310 at 1973.764 kb on + strand, within ABZR87_RS09310 at 1973.765 kb on - strand, within ABZR87_RS09310 at 1973.765 kb on - strand, within ABZR87_RS09310 at 1973.773 kb on + strand, within ABZR87_RS09310 at 1973.774 kb on - strand, within ABZR87_RS09310 at 1973.879 kb on - strand, within ABZR87_RS09310 at 1973.879 kb on - strand, within ABZR87_RS09310 at 1973.879 kb on - strand, within ABZR87_RS09310 at 1973.917 kb on + strand, within ABZR87_RS09310 at 1973.918 kb on - strand, within ABZR87_RS09310 at 1973.942 kb on - strand, within ABZR87_RS09310 at 1974.148 kb on + strand, within ABZR87_RS09310 at 1974.148 kb on + strand, within ABZR87_RS09310 at 1974.148 kb on + strand, within ABZR87_RS09310 at 1974.148 kb on + strand, within ABZR87_RS09310 at 1974.149 kb on - strand, within ABZR87_RS09310 at 1974.149 kb on - strand, within ABZR87_RS09310 at 1974.149 kb on - strand, within ABZR87_RS09310 at 1974.149 kb on - strand, within ABZR87_RS09310 at 1974.193 kb on + strand, within ABZR87_RS09310 at 1974.194 kb on - strand, within ABZR87_RS09310 at 1974.194 kb on - strand, within ABZR87_RS09310 at 1974.194 kb on - strand, within ABZR87_RS09310 at 1974.194 kb on - strand, within ABZR87_RS09310 at 1974.194 kb on - strand, within ABZR87_RS09310 at 1974.196 kb on + strand, within ABZR87_RS09310 at 1974.197 kb on - strand, within ABZR87_RS09310 at 1974.197 kb on - strand, within ABZR87_RS09310 at 1974.197 kb on - strand, within ABZR87_RS09310 at 1974.197 kb on - strand, within ABZR87_RS09310 at 1974.275 kb on - strand at 1974.275 kb on - strand at 1974.464 kb on + strand at 1974.464 kb on + strand at 1974.465 kb on - strand at 1974.465 kb on - strand at 1974.465 kb on - strand at 1974.534 kb on + strand, within ABZR87_RS09315 at 1974.588 kb on - strand, within ABZR87_RS09315 at 1974.921 kb on + strand, within ABZR87_RS09315 at 1974.922 kb on - strand, within ABZR87_RS09315 at 1974.947 kb on + strand, within ABZR87_RS09315 at 1974.947 kb on + strand, within ABZR87_RS09315 at 1974.947 kb on + strand, within ABZR87_RS09315 at 1974.948 kb on - strand, within ABZR87_RS09315 at 1974.948 kb on - strand, within ABZR87_RS09315 at 1974.948 kb on - strand, within ABZR87_RS09315 at 1974.948 kb on - strand, within ABZR87_RS09315 at 1975.007 kb on + strand, within ABZR87_RS09315 at 1975.007 kb on + strand, within ABZR87_RS09315 at 1975.007 kb on + strand, within ABZR87_RS09315 at 1975.008 kb on - strand, within ABZR87_RS09315 at 1975.008 kb on - strand, within ABZR87_RS09315 at 1975.104 kb on + strand, within ABZR87_RS09315 at 1975.182 kb on + strand at 1975.182 kb on + strand at 1975.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 1,971,365 + ABZR87_RS09305 0.32 +2.6 1,971,365 + ABZR87_RS09305 0.32 -2.3 1,971,365 + ABZR87_RS09305 0.32 -2.9 1,971,365 + ABZR87_RS09305 0.32 +3.2 1,971,365 + ABZR87_RS09305 0.32 +0.2 1,971,365 + ABZR87_RS09305 0.32 +0.1 1,971,365 + ABZR87_RS09305 0.32 +0.4 1,971,365 + ABZR87_RS09305 0.32 +0.3 1,971,501 - ABZR87_RS09305 0.45 +1.9 1,971,506 + ABZR87_RS09305 0.45 +2.0 1,971,507 - ABZR87_RS09305 0.45 +1.0 1,971,555 - ABZR87_RS09305 0.50 +1.4 1,971,602 + ABZR87_RS09305 0.54 +0.6 1,971,602 + ABZR87_RS09305 0.54 -2.5 1,971,603 - ABZR87_RS09305 0.54 -0.6 1,971,603 - ABZR87_RS09305 0.54 -1.3 1,971,665 + ABZR87_RS09305 0.60 -2.1 1,971,665 + ABZR87_RS09305 0.60 +0.5 1,971,665 + ABZR87_RS09305 0.60 -0.3 1,971,665 + ABZR87_RS09305 0.60 +1.9 1,971,666 - ABZR87_RS09305 0.60 -1.3 1,971,671 + ABZR87_RS09305 0.61 -1.7 1,971,803 + ABZR87_RS09305 0.73 +1.5 1,971,803 + ABZR87_RS09305 0.73 +0.7 1,971,804 - ABZR87_RS09305 0.74 -1.2 1,971,804 - ABZR87_RS09305 0.74 +1.3 1,971,927 - ABZR87_RS09305 0.85 -2.4 1,971,927 - ABZR87_RS09305 0.85 -0.7 1,971,962 + ABZR87_RS09305 0.89 +2.0 1,971,963 - ABZR87_RS09305 0.89 -2.9 1,972,080 - -0.0 1,972,080 - -1.3 1,972,486 - -0.1 1,972,486 - -3.1 1,972,608 + ABZR87_RS09310 0.14 +0.5 1,972,792 + ABZR87_RS09310 0.23 -3.7 1,972,793 - ABZR87_RS09310 0.23 +1.6 1,972,793 - ABZR87_RS09310 0.23 +0.3 1,972,793 - ABZR87_RS09310 0.23 +1.4 1,972,795 + ABZR87_RS09310 0.23 +0.6 1,972,795 + ABZR87_RS09310 0.23 -2.9 1,972,796 - ABZR87_RS09310 0.23 +0.6 1,972,796 - ABZR87_RS09310 0.23 -0.6 1,972,796 - ABZR87_RS09310 0.23 +0.8 1,972,801 + ABZR87_RS09310 0.23 -1.9 1,972,802 - ABZR87_RS09310 0.23 +1.5 1,972,946 - ABZR87_RS09310 0.30 +1.0 1,972,990 - ABZR87_RS09310 0.32 -0.6 1,973,080 + ABZR87_RS09310 0.36 -0.6 1,973,319 + ABZR87_RS09310 0.48 +0.3 1,973,319 + ABZR87_RS09310 0.48 -0.9 1,973,320 - ABZR87_RS09310 0.48 -1.1 1,973,320 - ABZR87_RS09310 0.48 +0.8 1,973,492 - ABZR87_RS09310 0.56 +1.2 1,973,524 + ABZR87_RS09310 0.57 +0.3 1,973,524 + ABZR87_RS09310 0.57 +1.6 1,973,524 + ABZR87_RS09310 0.57 -2.1 1,973,524 + ABZR87_RS09310 0.57 +1.9 1,973,525 - ABZR87_RS09310 0.57 +0.9 1,973,525 - ABZR87_RS09310 0.57 +2.6 1,973,605 + ABZR87_RS09310 0.61 -3.6 1,973,606 - ABZR87_RS09310 0.61 -0.9 1,973,663 - ABZR87_RS09310 0.64 -2.2 1,973,663 - ABZR87_RS09310 0.64 -0.9 1,973,671 + ABZR87_RS09310 0.64 +1.7 1,973,671 + ABZR87_RS09310 0.64 -4.0 1,973,671 + ABZR87_RS09310 0.64 -0.3 1,973,671 + ABZR87_RS09310 0.64 -3.2 1,973,737 + ABZR87_RS09310 0.67 -2.0 1,973,738 - ABZR87_RS09310 0.67 -2.1 1,973,738 - ABZR87_RS09310 0.67 +0.4 1,973,738 - ABZR87_RS09310 0.67 +0.9 1,973,764 + ABZR87_RS09310 0.69 +0.3 1,973,764 + ABZR87_RS09310 0.69 -3.1 1,973,764 + ABZR87_RS09310 0.69 +1.9 1,973,765 - ABZR87_RS09310 0.69 +1.1 1,973,765 - ABZR87_RS09310 0.69 +1.0 1,973,773 + ABZR87_RS09310 0.69 +0.6 1,973,774 - ABZR87_RS09310 0.69 -0.7 1,973,879 - ABZR87_RS09310 0.74 -0.1 1,973,879 - ABZR87_RS09310 0.74 -0.6 1,973,879 - ABZR87_RS09310 0.74 +1.9 1,973,917 + ABZR87_RS09310 0.76 +1.1 1,973,918 - ABZR87_RS09310 0.76 +1.4 1,973,942 - ABZR87_RS09310 0.77 -1.5 1,974,148 + ABZR87_RS09310 0.87 +0.3 1,974,148 + ABZR87_RS09310 0.87 +1.6 1,974,148 + ABZR87_RS09310 0.87 -1.9 1,974,148 + ABZR87_RS09310 0.87 +0.8 1,974,149 - ABZR87_RS09310 0.87 -2.4 1,974,149 - ABZR87_RS09310 0.87 +0.5 1,974,149 - ABZR87_RS09310 0.87 -2.8 1,974,149 - ABZR87_RS09310 0.87 -0.9 1,974,193 + ABZR87_RS09310 0.89 -1.4 1,974,194 - ABZR87_RS09310 0.89 +0.4 1,974,194 - ABZR87_RS09310 0.89 +1.7 1,974,194 - ABZR87_RS09310 0.89 -0.7 1,974,194 - ABZR87_RS09310 0.89 +0.2 1,974,194 - ABZR87_RS09310 0.89 -1.6 1,974,196 + ABZR87_RS09310 0.89 -0.6 1,974,197 - ABZR87_RS09310 0.89 -0.1 1,974,197 - ABZR87_RS09310 0.89 -3.9 1,974,197 - ABZR87_RS09310 0.89 +1.3 1,974,197 - ABZR87_RS09310 0.89 -1.5 1,974,275 - +0.1 1,974,275 - +2.0 1,974,464 + -0.2 1,974,464 + +0.4 1,974,465 - +2.3 1,974,465 - -1.1 1,974,465 - -2.4 1,974,534 + ABZR87_RS09315 0.14 -2.5 1,974,588 - ABZR87_RS09315 0.21 +1.2 1,974,921 + ABZR87_RS09315 0.65 -1.2 1,974,922 - ABZR87_RS09315 0.65 +1.3 1,974,947 + ABZR87_RS09315 0.68 +1.1 1,974,947 + ABZR87_RS09315 0.68 -0.2 1,974,947 + ABZR87_RS09315 0.68 -1.3 1,974,948 - ABZR87_RS09315 0.68 +1.8 1,974,948 - ABZR87_RS09315 0.68 -0.6 1,974,948 - ABZR87_RS09315 0.68 +1.1 1,974,948 - ABZR87_RS09315 0.68 -0.6 1,975,007 + ABZR87_RS09315 0.76 +2.7 1,975,007 + ABZR87_RS09315 0.76 +0.7 1,975,007 + ABZR87_RS09315 0.76 +2.3 1,975,008 - ABZR87_RS09315 0.76 -2.3 1,975,008 - ABZR87_RS09315 0.76 +0.7 1,975,104 + ABZR87_RS09315 0.89 -3.0 1,975,182 + -0.4 1,975,182 + +0.8 1,975,183 - +1.1
Or see this region's nucleotide sequence