Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08505 and ABZR87_RS08510 are separated by 92 nucleotides ABZR87_RS08510 and ABZR87_RS08515 are separated by 28 nucleotides ABZR87_RS08515 and ABZR87_RS08520 are separated by 149 nucleotides
ABZR87_RS08505: ABZR87_RS08505 - CpaE family protein, at 1,806,197 to 1,807,390
_RS08505
ABZR87_RS08510: ABZR87_RS08510 - hypothetical protein, at 1,807,483 to 1,807,791
_RS08510
ABZR87_RS08515: ABZR87_RS08515 - type II and III secretion system protein family protein, at 1,807,820 to 1,809,712
_RS08515
ABZR87_RS08520: ABZR87_RS08520 - Flp pilus assembly protein CpaB, at 1,809,862 to 1,810,719
_RS08520
Position (kb) 1807
1808
1809
1810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1806.874 kb on - strand, within ABZR87_RS08505 at 1807.344 kb on + strand at 1807.345 kb on - strand at 1807.371 kb on - strand at 1807.484 kb on + strand at 1807.485 kb on - strand at 1807.485 kb on - strand at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.575 kb on - strand, within ABZR87_RS08510 at 1807.575 kb on - strand, within ABZR87_RS08510 at 1807.704 kb on - strand, within ABZR87_RS08510 at 1807.928 kb on + strand at 1807.929 kb on - strand at 1807.929 kb on - strand at 1807.929 kb on - strand at 1807.929 kb on - strand at 1808.471 kb on + strand, within ABZR87_RS08515 at 1808.472 kb on - strand, within ABZR87_RS08515 at 1809.163 kb on - strand, within ABZR87_RS08515 at 1809.303 kb on + strand, within ABZR87_RS08515 at 1809.304 kb on - strand, within ABZR87_RS08515 at 1809.369 kb on - strand, within ABZR87_RS08515 at 1809.565 kb on + strand at 1809.566 kb on - strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.664 kb on - strand at 1809.664 kb on - strand at 1809.754 kb on + strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.947 kb on - strand at 1809.947 kb on - strand at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 1,806,874 - ABZR87_RS08505 0.57 -3.0 1,807,344 + -2.9 1,807,345 - +0.1 1,807,371 - -3.4 1,807,484 + -3.6 1,807,485 - +0.5 1,807,485 - -2.6 1,807,574 + ABZR87_RS08510 0.29 +1.7 1,807,574 + ABZR87_RS08510 0.29 +1.3 1,807,574 + ABZR87_RS08510 0.29 +0.8 1,807,574 + ABZR87_RS08510 0.29 -1.3 1,807,574 + ABZR87_RS08510 0.29 -1.5 1,807,575 - ABZR87_RS08510 0.30 +1.2 1,807,575 - ABZR87_RS08510 0.30 -2.4 1,807,704 - ABZR87_RS08510 0.72 +0.0 1,807,928 + +1.1 1,807,929 - +0.1 1,807,929 - +1.2 1,807,929 - +0.3 1,807,929 - +0.3 1,808,471 + ABZR87_RS08515 0.34 -3.5 1,808,472 - ABZR87_RS08515 0.34 +0.4 1,809,163 - ABZR87_RS08515 0.71 +0.5 1,809,303 + ABZR87_RS08515 0.78 -0.4 1,809,304 - ABZR87_RS08515 0.78 +0.6 1,809,369 - ABZR87_RS08515 0.82 -0.3 1,809,565 + +1.6 1,809,566 - +0.8 1,809,663 + +2.5 1,809,663 + -1.0 1,809,663 + -0.9 1,809,663 + +0.4 1,809,663 + -2.0 1,809,663 + -0.2 1,809,664 - +0.6 1,809,664 - -1.0 1,809,754 + -2.0 1,809,755 - +1.3 1,809,755 - -0.7 1,809,755 - -1.0 1,809,947 - -3.1 1,809,947 - -1.6 1,810,310 + ABZR87_RS08520 0.52 -0.3 1,810,310 + ABZR87_RS08520 0.52 -1.9 1,810,310 + ABZR87_RS08520 0.52 +1.6 1,810,310 + ABZR87_RS08520 0.52 +0.5 1,810,311 - ABZR87_RS08520 0.52 -1.5 1,810,311 - ABZR87_RS08520 0.52 +0.6 1,810,311 - ABZR87_RS08520 0.52 -1.9 1,810,311 - ABZR87_RS08520 0.52 -1.7
Or see this region's nucleotide sequence