Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08500 and ABZR87_RS08505 are separated by 39 nucleotides ABZR87_RS08505 and ABZR87_RS08510 are separated by 92 nucleotides ABZR87_RS08510 and ABZR87_RS08515 are separated by 28 nucleotides
ABZR87_RS08500: ABZR87_RS08500 - CpaF family protein, at 1,804,793 to 1,806,157
_RS08500
ABZR87_RS08505: ABZR87_RS08505 - CpaE family protein, at 1,806,197 to 1,807,390
_RS08505
ABZR87_RS08510: ABZR87_RS08510 - hypothetical protein, at 1,807,483 to 1,807,791
_RS08510
ABZR87_RS08515: ABZR87_RS08515 - type II and III secretion system protein family protein, at 1,807,820 to 1,809,712
_RS08515
Position (kb) 1806
1807
1808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1805.415 kb on + strand, within ABZR87_RS08500 at 1805.415 kb on + strand, within ABZR87_RS08500 at 1805.416 kb on - strand, within ABZR87_RS08500 at 1805.790 kb on + strand, within ABZR87_RS08500 at 1805.790 kb on + strand, within ABZR87_RS08500 at 1805.790 kb on + strand, within ABZR87_RS08500 at 1805.791 kb on - strand, within ABZR87_RS08500 at 1805.791 kb on - strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.796 kb on + strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1805.797 kb on - strand, within ABZR87_RS08500 at 1806.061 kb on - strand at 1806.390 kb on + strand, within ABZR87_RS08505 at 1806.655 kb on - strand, within ABZR87_RS08505 at 1806.655 kb on - strand, within ABZR87_RS08505 at 1806.874 kb on - strand, within ABZR87_RS08505 at 1807.344 kb on + strand at 1807.345 kb on - strand at 1807.371 kb on - strand at 1807.484 kb on + strand at 1807.485 kb on - strand at 1807.485 kb on - strand at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.574 kb on + strand, within ABZR87_RS08510 at 1807.575 kb on - strand, within ABZR87_RS08510 at 1807.575 kb on - strand, within ABZR87_RS08510 at 1807.704 kb on - strand, within ABZR87_RS08510 at 1807.928 kb on + strand at 1807.929 kb on - strand at 1807.929 kb on - strand at 1807.929 kb on - strand at 1807.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 1,805,415 + ABZR87_RS08500 0.46 +1.6 1,805,415 + ABZR87_RS08500 0.46 +1.0 1,805,416 - ABZR87_RS08500 0.46 -1.3 1,805,790 + ABZR87_RS08500 0.73 -0.6 1,805,790 + ABZR87_RS08500 0.73 -1.5 1,805,790 + ABZR87_RS08500 0.73 -2.4 1,805,791 - ABZR87_RS08500 0.73 -0.7 1,805,791 - ABZR87_RS08500 0.73 -1.6 1,805,796 + ABZR87_RS08500 0.73 -3.6 1,805,796 + ABZR87_RS08500 0.73 -0.6 1,805,796 + ABZR87_RS08500 0.73 -0.2 1,805,796 + ABZR87_RS08500 0.73 -2.3 1,805,796 + ABZR87_RS08500 0.73 -0.5 1,805,796 + ABZR87_RS08500 0.73 +0.9 1,805,797 - ABZR87_RS08500 0.74 +0.2 1,805,797 - ABZR87_RS08500 0.74 -0.3 1,805,797 - ABZR87_RS08500 0.74 -2.0 1,805,797 - ABZR87_RS08500 0.74 -0.7 1,805,797 - ABZR87_RS08500 0.74 +1.1 1,805,797 - ABZR87_RS08500 0.74 +0.9 1,805,797 - ABZR87_RS08500 0.74 +0.2 1,805,797 - ABZR87_RS08500 0.74 +0.1 1,805,797 - ABZR87_RS08500 0.74 -0.7 1,805,797 - ABZR87_RS08500 0.74 +1.1 1,806,061 - +2.4 1,806,390 + ABZR87_RS08505 0.16 -1.7 1,806,655 - ABZR87_RS08505 0.38 -0.8 1,806,655 - ABZR87_RS08505 0.38 -2.2 1,806,874 - ABZR87_RS08505 0.57 -3.0 1,807,344 + -2.9 1,807,345 - +0.1 1,807,371 - -3.4 1,807,484 + -3.6 1,807,485 - +0.5 1,807,485 - -2.6 1,807,574 + ABZR87_RS08510 0.29 +1.7 1,807,574 + ABZR87_RS08510 0.29 +1.3 1,807,574 + ABZR87_RS08510 0.29 +0.8 1,807,574 + ABZR87_RS08510 0.29 -1.3 1,807,574 + ABZR87_RS08510 0.29 -1.5 1,807,575 - ABZR87_RS08510 0.30 +1.2 1,807,575 - ABZR87_RS08510 0.30 -2.4 1,807,704 - ABZR87_RS08510 0.72 +0.0 1,807,928 + +1.1 1,807,929 - +0.1 1,807,929 - +1.2 1,807,929 - +0.3 1,807,929 - +0.3
Or see this region's nucleotide sequence