Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07715 and ABZR87_RS07720 overlap by 17 nucleotides ABZR87_RS07720 and ABZR87_RS07725 are separated by 119 nucleotides ABZR87_RS07725 and ABZR87_RS07730 overlap by 4 nucleotides ABZR87_RS07730 and ABZR87_RS07735 are separated by 11 nucleotides
ABZR87_RS07715: ABZR87_RS07715 - DMT family transporter, at 1,636,398 to 1,637,303
_RS07715
ABZR87_RS07720: ABZR87_RS07720 - lactoylglutathione lyase, at 1,637,287 to 1,637,694
_RS07720
ABZR87_RS07725: ABZR87_RS07725 - SprT family zinc-dependent metalloprotease, at 1,637,814 to 1,638,692
_RS07725
ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441
_RS07730
ABZR87_RS07735: ABZR87_RS07735 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,639,453 to 1,640,031
_RS07735
Position (kb) 1637
1638
1639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1636.976 kb on - strand, within ABZR87_RS07715 at 1636.976 kb on - strand, within ABZR87_RS07715 at 1637.008 kb on + strand, within ABZR87_RS07715 at 1637.238 kb on + strand at 1637.238 kb on + strand at 1637.238 kb on + strand at 1637.239 kb on - strand at 1637.239 kb on - strand at 1637.239 kb on - strand at 1637.339 kb on + strand, within ABZR87_RS07720 at 1637.339 kb on + strand, within ABZR87_RS07720 at 1637.339 kb on + strand, within ABZR87_RS07720 at 1637.340 kb on - strand, within ABZR87_RS07720 at 1637.340 kb on - strand, within ABZR87_RS07720 at 1637.498 kb on + strand, within ABZR87_RS07720 at 1637.499 kb on - strand, within ABZR87_RS07720 at 1637.513 kb on + strand, within ABZR87_RS07720 at 1637.519 kb on + strand, within ABZR87_RS07720 at 1637.519 kb on + strand, within ABZR87_RS07720 at 1637.519 kb on + strand, within ABZR87_RS07720 at 1637.519 kb on + strand, within ABZR87_RS07720 at 1637.520 kb on - strand, within ABZR87_RS07720 at 1637.520 kb on - strand, within ABZR87_RS07720 at 1637.520 kb on - strand, within ABZR87_RS07720 at 1637.520 kb on - strand, within ABZR87_RS07720 at 1637.520 kb on - strand, within ABZR87_RS07720 at 1637.579 kb on + strand, within ABZR87_RS07720 at 1637.580 kb on - strand, within ABZR87_RS07720 at 1637.585 kb on + strand, within ABZR87_RS07720 at 1637.585 kb on + strand, within ABZR87_RS07720 at 1637.586 kb on - strand, within ABZR87_RS07720 at 1637.586 kb on - strand, within ABZR87_RS07720 at 1637.586 kb on - strand, within ABZR87_RS07720 at 1637.636 kb on + strand, within ABZR87_RS07720 at 1637.679 kb on + strand at 1637.679 kb on + strand at 1637.679 kb on + strand at 1637.679 kb on + strand at 1637.680 kb on - strand at 1637.680 kb on - strand at 1637.680 kb on - strand at 1637.680 kb on - strand at 1637.680 kb on - strand at 1637.730 kb on + strand at 1637.730 kb on + strand at 1637.730 kb on + strand at 1637.730 kb on + strand at 1637.731 kb on - strand at 1637.731 kb on - strand at 1637.731 kb on - strand at 1637.736 kb on - strand at 1637.736 kb on - strand at 1637.831 kb on - strand at 1637.831 kb on - strand at 1637.959 kb on + strand, within ABZR87_RS07725 at 1637.959 kb on + strand, within ABZR87_RS07725 at 1637.959 kb on + strand, within ABZR87_RS07725 at 1637.959 kb on + strand, within ABZR87_RS07725 at 1637.960 kb on - strand, within ABZR87_RS07725 at 1637.960 kb on - strand, within ABZR87_RS07725 at 1637.960 kb on - strand, within ABZR87_RS07725 at 1637.960 kb on - strand, within ABZR87_RS07725 at 1637.960 kb on - strand, within ABZR87_RS07725 at 1638.061 kb on + strand, within ABZR87_RS07725 at 1638.061 kb on + strand, within ABZR87_RS07725 at 1638.068 kb on + strand, within ABZR87_RS07725 at 1638.068 kb on + strand, within ABZR87_RS07725 at 1638.069 kb on - strand, within ABZR87_RS07725 at 1638.069 kb on - strand, within ABZR87_RS07725 at 1638.069 kb on - strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.094 kb on + strand, within ABZR87_RS07725 at 1638.095 kb on - strand, within ABZR87_RS07725 at 1638.095 kb on - strand, within ABZR87_RS07725 at 1638.095 kb on - strand, within ABZR87_RS07725 at 1638.095 kb on - strand, within ABZR87_RS07725 at 1638.095 kb on - strand, within ABZR87_RS07725 at 1638.269 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.706 kb on - strand at 1638.706 kb on - strand at 1638.709 kb on + strand at 1638.710 kb on - strand at 1638.724 kb on + strand at 1638.817 kb on + strand, within ABZR87_RS07730 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.114 kb on - strand, within ABZR87_RS07730 at 1639.133 kb on + strand, within ABZR87_RS07730 at 1639.134 kb on - strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.261 kb on - strand, within ABZR87_RS07730 at 1639.417 kb on - strand at 1639.589 kb on - strand, within ABZR87_RS07735
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 1,636,976 - ABZR87_RS07715 0.64 +0.3 1,636,976 - ABZR87_RS07715 0.64 +2.1 1,637,008 + ABZR87_RS07715 0.67 -0.0 1,637,238 + +0.6 1,637,238 + -1.6 1,637,238 + -2.6 1,637,239 - -1.9 1,637,239 - +0.4 1,637,239 - -0.5 1,637,339 + ABZR87_RS07720 0.13 -0.5 1,637,339 + ABZR87_RS07720 0.13 -2.1 1,637,339 + ABZR87_RS07720 0.13 +0.8 1,637,340 - ABZR87_RS07720 0.13 +2.2 1,637,340 - ABZR87_RS07720 0.13 +2.1 1,637,498 + ABZR87_RS07720 0.52 -0.1 1,637,499 - ABZR87_RS07720 0.52 -1.8 1,637,513 + ABZR87_RS07720 0.55 +0.4 1,637,519 + ABZR87_RS07720 0.57 +1.7 1,637,519 + ABZR87_RS07720 0.57 -0.6 1,637,519 + ABZR87_RS07720 0.57 +0.7 1,637,519 + ABZR87_RS07720 0.57 +0.4 1,637,520 - ABZR87_RS07720 0.57 +0.9 1,637,520 - ABZR87_RS07720 0.57 -1.2 1,637,520 - ABZR87_RS07720 0.57 -2.6 1,637,520 - ABZR87_RS07720 0.57 -3.2 1,637,520 - ABZR87_RS07720 0.57 -2.6 1,637,579 + ABZR87_RS07720 0.72 -1.7 1,637,580 - ABZR87_RS07720 0.72 -0.0 1,637,585 + ABZR87_RS07720 0.73 +1.9 1,637,585 + ABZR87_RS07720 0.73 -0.8 1,637,586 - ABZR87_RS07720 0.73 -0.8 1,637,586 - ABZR87_RS07720 0.73 -0.0 1,637,586 - ABZR87_RS07720 0.73 +0.7 1,637,636 + ABZR87_RS07720 0.86 -2.4 1,637,679 + -1.3 1,637,679 + -1.1 1,637,679 + +0.5 1,637,679 + -2.1 1,637,680 - -0.4 1,637,680 - +0.9 1,637,680 - +0.5 1,637,680 - +0.7 1,637,680 - -0.3 1,637,730 + +1.8 1,637,730 + -3.5 1,637,730 + -0.8 1,637,730 + -1.9 1,637,731 - -1.2 1,637,731 - +1.7 1,637,731 - +1.1 1,637,736 - +0.2 1,637,736 - -1.0 1,637,831 - +0.3 1,637,831 - +0.9 1,637,959 + ABZR87_RS07725 0.16 +0.6 1,637,959 + ABZR87_RS07725 0.16 +0.4 1,637,959 + ABZR87_RS07725 0.16 +2.5 1,637,959 + ABZR87_RS07725 0.16 +1.4 1,637,960 - ABZR87_RS07725 0.17 +0.3 1,637,960 - ABZR87_RS07725 0.17 +1.7 1,637,960 - ABZR87_RS07725 0.17 +1.0 1,637,960 - ABZR87_RS07725 0.17 -2.2 1,637,960 - ABZR87_RS07725 0.17 +0.2 1,638,061 + ABZR87_RS07725 0.28 +0.9 1,638,061 + ABZR87_RS07725 0.28 -0.2 1,638,068 + ABZR87_RS07725 0.29 +0.6 1,638,068 + ABZR87_RS07725 0.29 -4.2 1,638,069 - ABZR87_RS07725 0.29 -1.9 1,638,069 - ABZR87_RS07725 0.29 +1.4 1,638,069 - ABZR87_RS07725 0.29 -0.6 1,638,094 + ABZR87_RS07725 0.32 -2.3 1,638,094 + ABZR87_RS07725 0.32 +0.4 1,638,094 + ABZR87_RS07725 0.32 +1.8 1,638,094 + ABZR87_RS07725 0.32 +2.3 1,638,094 + ABZR87_RS07725 0.32 +0.5 1,638,094 + ABZR87_RS07725 0.32 -3.1 1,638,094 + ABZR87_RS07725 0.32 +0.5 1,638,094 + ABZR87_RS07725 0.32 -0.8 1,638,095 - ABZR87_RS07725 0.32 +0.5 1,638,095 - ABZR87_RS07725 0.32 +0.0 1,638,095 - ABZR87_RS07725 0.32 +0.6 1,638,095 - ABZR87_RS07725 0.32 -0.9 1,638,095 - ABZR87_RS07725 0.32 -0.9 1,638,269 + ABZR87_RS07725 0.52 -1.5 1,638,493 + ABZR87_RS07725 0.77 -3.3 1,638,493 + ABZR87_RS07725 0.77 -0.4 1,638,493 + ABZR87_RS07725 0.77 +4.4 1,638,493 + ABZR87_RS07725 0.77 +0.5 1,638,493 + ABZR87_RS07725 0.77 +0.8 1,638,493 + ABZR87_RS07725 0.77 +1.7 1,638,494 - ABZR87_RS07725 0.77 -1.2 1,638,494 - ABZR87_RS07725 0.77 -1.8 1,638,494 - ABZR87_RS07725 0.77 -2.1 1,638,494 - ABZR87_RS07725 0.77 -3.2 1,638,494 - ABZR87_RS07725 0.77 -3.8 1,638,706 - -3.3 1,638,706 - +0.6 1,638,709 + -1.6 1,638,710 - -3.2 1,638,724 + +2.1 1,638,817 + ABZR87_RS07730 0.17 +2.2 1,639,109 + ABZR87_RS07730 0.56 -0.3 1,639,109 + ABZR87_RS07730 0.56 +0.2 1,639,113 + ABZR87_RS07730 0.56 -2.3 1,639,113 + ABZR87_RS07730 0.56 +0.2 1,639,113 + ABZR87_RS07730 0.56 +0.2 1,639,113 + ABZR87_RS07730 0.56 +1.9 1,639,114 - ABZR87_RS07730 0.56 -0.6 1,639,133 + ABZR87_RS07730 0.59 -0.6 1,639,134 - ABZR87_RS07730 0.59 +0.4 1,639,260 + ABZR87_RS07730 0.76 +0.2 1,639,260 + ABZR87_RS07730 0.76 -1.0 1,639,260 + ABZR87_RS07730 0.76 +0.4 1,639,261 - ABZR87_RS07730 0.76 -0.1 1,639,417 - -0.5 1,639,589 - ABZR87_RS07735 0.23 -2.6
Or see this region's nucleotide sequence