Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07660

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07655 and ABZR87_RS07660 are separated by 3 nucleotidesABZR87_RS07660 and ABZR87_RS07665 overlap by 4 nucleotides ABZR87_RS07655: ABZR87_RS07655 - FAD-dependent oxidoreductase, at 1,621,311 to 1,622,594 _RS07655 ABZR87_RS07660: ABZR87_RS07660 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 1,622,598 to 1,623,833 _RS07660 ABZR87_RS07665: ABZR87_RS07665 - aminopeptidase P N-terminal domain-containing protein, at 1,623,830 to 1,625,218 _RS07665 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1621.709 kb on + strand, within ABZR87_RS07655at 1621.732 kb on + strand, within ABZR87_RS07655at 1621.749 kb on + strand, within ABZR87_RS07655at 1621.749 kb on + strand, within ABZR87_RS07655at 1621.750 kb on - strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.179 kb on + strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.321 kb on - strand, within ABZR87_RS07655at 1623.954 kb on + strandat 1623.955 kb on - strandat 1623.955 kb on - strandat 1623.955 kb on - strandat 1623.955 kb on - strandat 1623.987 kb on + strand, within ABZR87_RS07665at 1623.988 kb on - strand, within ABZR87_RS07665at 1623.988 kb on - strand, within ABZR87_RS07665at 1624.135 kb on - strand, within ABZR87_RS07665at 1624.135 kb on - strand, within ABZR87_RS07665at 1624.135 kb on - strand, within ABZR87_RS07665at 1624.135 kb on - strand, within ABZR87_RS07665at 1624.147 kb on - strand, within ABZR87_RS07665at 1624.254 kb on - strand, within ABZR87_RS07665at 1624.254 kb on - strand, within ABZR87_RS07665at 1624.261 kb on - strand, within ABZR87_RS07665at 1624.261 kb on - strand, within ABZR87_RS07665at 1624.321 kb on - strand, within ABZR87_RS07665at 1624.343 kb on - strand, within ABZR87_RS07665at 1624.387 kb on - strand, within ABZR87_RS07665at 1624.504 kb on - strand, within ABZR87_RS07665at 1624.504 kb on - strand, within ABZR87_RS07665at 1624.540 kb on - strand, within ABZR87_RS07665at 1624.564 kb on - strand, within ABZR87_RS07665at 1624.564 kb on - strand, within ABZR87_RS07665at 1624.564 kb on - strand, within ABZR87_RS07665at 1624.804 kb on - strand, within ABZR87_RS07665

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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1,621,709 + ABZR87_RS07655 0.31 +2.5
1,621,732 + ABZR87_RS07655 0.33 -2.8
1,621,749 + ABZR87_RS07655 0.34 -1.1
1,621,749 + ABZR87_RS07655 0.34 -2.8
1,621,750 - ABZR87_RS07655 0.34 -1.5
1,622,146 + ABZR87_RS07655 0.65 +2.2
1,622,146 + ABZR87_RS07655 0.65 +0.3
1,622,146 + ABZR87_RS07655 0.65 -0.8
1,622,146 + ABZR87_RS07655 0.65 -1.5
1,622,146 + ABZR87_RS07655 0.65 +2.2
1,622,146 + ABZR87_RS07655 0.65 +0.8
1,622,146 + ABZR87_RS07655 0.65 +1.3
1,622,146 + ABZR87_RS07655 0.65 +0.6
1,622,146 + ABZR87_RS07655 0.65 +0.8
1,622,146 + ABZR87_RS07655 0.65 -2.7
1,622,146 + ABZR87_RS07655 0.65 -0.9
1,622,146 + ABZR87_RS07655 0.65 -0.9
1,622,146 + ABZR87_RS07655 0.65 -1.8
1,622,146 + ABZR87_RS07655 0.65 -3.0
1,622,146 + ABZR87_RS07655 0.65 -2.7
1,622,147 - ABZR87_RS07655 0.65 +0.0
1,622,147 - ABZR87_RS07655 0.65 +1.4
1,622,147 - ABZR87_RS07655 0.65 +0.4
1,622,147 - ABZR87_RS07655 0.65 +0.1
1,622,147 - ABZR87_RS07655 0.65 +1.9
1,622,147 - ABZR87_RS07655 0.65 +0.7
1,622,179 + ABZR87_RS07655 0.68 -2.3
1,622,180 - ABZR87_RS07655 0.68 +1.4
1,622,180 - ABZR87_RS07655 0.68 -3.1
1,622,180 - ABZR87_RS07655 0.68 -0.2
1,622,180 - ABZR87_RS07655 0.68 -0.7
1,622,321 - ABZR87_RS07655 0.79 +1.2
1,623,954 + -0.5
1,623,955 - -2.3
1,623,955 - +0.5
1,623,955 - -1.0
1,623,955 - -2.8
1,623,987 + ABZR87_RS07665 0.11 +0.4
1,623,988 - ABZR87_RS07665 0.11 +1.4
1,623,988 - ABZR87_RS07665 0.11 -2.1
1,624,135 - ABZR87_RS07665 0.22 -1.6
1,624,135 - ABZR87_RS07665 0.22 -2.9
1,624,135 - ABZR87_RS07665 0.22 -1.6
1,624,135 - ABZR87_RS07665 0.22 +1.2
1,624,147 - ABZR87_RS07665 0.23 -2.5
1,624,254 - ABZR87_RS07665 0.31 -2.5
1,624,254 - ABZR87_RS07665 0.31 -2.7
1,624,261 - ABZR87_RS07665 0.31 -2.7
1,624,261 - ABZR87_RS07665 0.31 -3.6
1,624,321 - ABZR87_RS07665 0.35 -3.2
1,624,343 - ABZR87_RS07665 0.37 -4.1
1,624,387 - ABZR87_RS07665 0.40 -2.2
1,624,504 - ABZR87_RS07665 0.49 -3.4
1,624,504 - ABZR87_RS07665 0.49 -3.0
1,624,540 - ABZR87_RS07665 0.51 -3.3
1,624,564 - ABZR87_RS07665 0.53 -1.0
1,624,564 - ABZR87_RS07665 0.53 -1.8
1,624,564 - ABZR87_RS07665 0.53 -2.8
1,624,804 - ABZR87_RS07665 0.70 -2.6

Or see this region's nucleotide sequence