Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07185

Experiment: soil EcoFAB sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil EcoFAB sample 1; outgrowth in LB
1,518,363	+				+2.2
1,518,364	-				+1.3
1,518,419	+				-2.0
1,518,419	+				-0.9
1,518,420	-				+3.4
1,518,420	-				-2.6
1,518,420	-				+1.4
1,518,420	-				+0.5
1,518,420	-				+1.7
1,518,420	-				-1.9
1,518,484	+				-0.8
1,518,484	+				-3.1
1,518,484	+				-0.1
1,518,485	-				-1.9
1,518,485	-				+1.0
1,518,571	+		ABZR87_RS07180	0.18	+1.7
1,518,572	-		ABZR87_RS07180	0.18	-1.0
1,518,638	+		ABZR87_RS07180	0.27	-3.1
1,518,638	+		ABZR87_RS07180	0.27	+1.3
1,518,638	+		ABZR87_RS07180	0.27	+1.6
1,518,638	+		ABZR87_RS07180	0.27	+1.7
1,518,638	+		ABZR87_RS07180	0.27	-0.0
1,518,639	-		ABZR87_RS07180	0.27	-1.5
1,518,683	+		ABZR87_RS07180	0.33	-2.3
1,518,736	+		ABZR87_RS07180	0.40	+1.5
1,518,737	-		ABZR87_RS07180	0.40	-3.2
1,518,737	-		ABZR87_RS07180	0.40	+0.9
1,518,737	-		ABZR87_RS07180	0.40	+1.5
1,518,801	-		ABZR87_RS07180	0.49	-1.6
1,518,831	-		ABZR87_RS07180	0.53	+0.0
1,518,859	+		ABZR87_RS07180	0.57	+0.2
1,518,859	+		ABZR87_RS07180	0.57	-3.2
1,518,859	+		ABZR87_RS07180	0.57	-1.1
1,518,859	+		ABZR87_RS07180	0.57	-2.4
1,518,859	+		ABZR87_RS07180	0.57	+2.1
1,518,859	+		ABZR87_RS07180	0.57	+2.4
1,518,859	+		ABZR87_RS07180	0.57	-0.8
1,518,859	+		ABZR87_RS07180	0.57	+1.0
1,518,859	+		ABZR87_RS07180	0.57	+0.8
1,518,859	+		ABZR87_RS07180	0.57	-1.5
1,518,859	+		ABZR87_RS07180	0.57	+1.0
1,518,860	-		ABZR87_RS07180	0.57	-3.6
1,518,860	-		ABZR87_RS07180	0.57	-2.6
1,518,860	-		ABZR87_RS07180	0.57	+1.2
1,518,860	-		ABZR87_RS07180	0.57	+2.7
1,518,860	-		ABZR87_RS07180	0.57	+0.3
1,518,979	+		ABZR87_RS07180	0.73	+0.2
1,518,980	-		ABZR87_RS07180	0.73	+1.3
1,518,980	-		ABZR87_RS07180	0.73	+1.3
1,519,148	+				-2.0
1,519,156	+				+1.0
1,519,156	+				-0.5
1,519,156	+				+0.9
1,519,156	+				+2.6
1,519,156	+				+1.7
1,519,156	+				-0.8
1,519,156	+				-2.8
1,519,157	-				+1.5
1,519,157	-				-0.3
1,519,157	-				-1.5
1,519,157	-				-3.8
1,519,226	+				+0.3
1,519,226	+				+0.9
1,519,226	+				+1.8
1,519,227	-				+0.4
1,519,227	-				+0.6
1,519,227	-				-0.4
1,519,227	-				-1.5
1,519,227	-				+1.3
1,519,259	+				+1.0
1,519,259	+				+2.6
1,519,259	+				-0.4
1,519,259	+				+0.9
1,519,260	-				-0.8
1,519,266	+				+1.2
1,519,266	+				+2.0
1,519,266	+				+1.1
1,519,266	+				-0.1
1,519,266	+				-0.2
1,519,266	+				-3.5
1,519,267	-				-0.6
1,519,267	-				+0.5
1,519,267	-				+1.8
1,519,267	-				-3.4
1,519,267	-				-2.3
1,519,267	-				+0.5
1,519,398	+				+2.2
1,519,399	-				+1.9
1,519,399	-				+0.1
1,519,399	-				+1.3
1,519,434	+		ABZR87_RS07185	0.12	-1.2
1,519,434	+		ABZR87_RS07185	0.12	+0.7
1,519,480	+		ABZR87_RS07185	0.15	-0.4
1,519,481	-		ABZR87_RS07185	0.15	+1.9
1,519,500	+		ABZR87_RS07185	0.17	+1.4
1,519,500	+		ABZR87_RS07185	0.17	+1.3
1,519,500	+		ABZR87_RS07185	0.17	-0.5
1,519,526	+		ABZR87_RS07185	0.18	+4.6
1,519,527	-		ABZR87_RS07185	0.18	-2.1
1,519,539	+		ABZR87_RS07185	0.19	-0.5
1,519,591	+		ABZR87_RS07185	0.23	-1.8
1,519,591	+		ABZR87_RS07185	0.23	+1.7
1,519,592	-		ABZR87_RS07185	0.23	+0.3
1,519,592	-		ABZR87_RS07185	0.23	-3.1
1,519,592	-		ABZR87_RS07185	0.23	+0.3
1,519,605	+		ABZR87_RS07185	0.24	-0.1
1,519,605	+		ABZR87_RS07185	0.24	+1.0
1,519,605	+		ABZR87_RS07185	0.24	-2.5
1,519,606	-		ABZR87_RS07185	0.24	+1.4
1,519,606	-		ABZR87_RS07185	0.24	-2.6
1,519,606	-		ABZR87_RS07185	0.24	-3.4
1,519,606	-		ABZR87_RS07185	0.24	-2.5
1,519,615	+		ABZR87_RS07185	0.24	-3.6
1,519,616	-		ABZR87_RS07185	0.25	+0.8
1,519,643	+		ABZR87_RS07185	0.26	-3.4
1,519,644	-		ABZR87_RS07185	0.27	+1.0
1,519,666	-		ABZR87_RS07185	0.28	-0.7
1,519,770	+		ABZR87_RS07185	0.35	-0.6
1,519,770	+		ABZR87_RS07185	0.35	+2.0
1,519,770	+		ABZR87_RS07185	0.35	+2.0
1,519,770	+		ABZR87_RS07185	0.35	+0.4
1,519,770	+		ABZR87_RS07185	0.35	+1.8
1,519,770	+		ABZR87_RS07185	0.35	+2.4
1,519,770	+		ABZR87_RS07185	0.35	-0.5
1,519,770	+		ABZR87_RS07185	0.35	-0.0
1,519,771	-		ABZR87_RS07185	0.35	+0.3
1,519,771	-		ABZR87_RS07185	0.35	-0.9
1,519,771	-		ABZR87_RS07185	0.35	-4.0
1,519,784	-		ABZR87_RS07185	0.36	+2.1
1,519,889	+		ABZR87_RS07185	0.43	-2.0
1,519,889	+		ABZR87_RS07185	0.43	+3.6
1,519,889	+		ABZR87_RS07185	0.43	+2.3
1,519,889	+		ABZR87_RS07185	0.43	-0.8
1,519,945	+		ABZR87_RS07185	0.47	+1.1
1,519,946	-		ABZR87_RS07185	0.47	+1.3
1,519,946	-		ABZR87_RS07185	0.47	-2.5
1,519,946	-		ABZR87_RS07185	0.47	+0.1
1,519,946	-		ABZR87_RS07185	0.47	+2.4
1,519,946	-		ABZR87_RS07185	0.47	+1.5
1,519,946	-		ABZR87_RS07185	0.47	+0.7
1,520,105	+		ABZR87_RS07185	0.58	-1.2
1,520,105	+		ABZR87_RS07185	0.58	-0.2
1,520,105	+		ABZR87_RS07185	0.58	-3.6
1,520,105	+		ABZR87_RS07185	0.58	+1.6
1,520,106	-		ABZR87_RS07185	0.58	+0.9
1,520,106	-		ABZR87_RS07185	0.58	-1.3
1,520,162	+		ABZR87_RS07185	0.62	+1.5
1,520,162	+		ABZR87_RS07185	0.62	-2.3
1,520,163	-		ABZR87_RS07185	0.62	-0.8
1,520,246	+		ABZR87_RS07185	0.68	+0.7
1,520,247	-		ABZR87_RS07185	0.68	+0.6
1,520,294	+		ABZR87_RS07185	0.71	-2.6
1,520,354	+		ABZR87_RS07185	0.76	+2.6
1,520,355	-		ABZR87_RS07185	0.76	-1.8
1,520,380	+		ABZR87_RS07185	0.77	+0.1
1,520,380	+		ABZR87_RS07185	0.77	-0.5
1,520,401	+		ABZR87_RS07185	0.79	+1.8
1,520,440	+		ABZR87_RS07185	0.81	+1.2
1,520,569	+				+0.1
1,520,570	-				+0.8
1,520,570	-				+0.5
1,520,570	-				+0.5
1,520,570	-				-2.2
1,520,570	-				+1.4
1,520,601	+				-0.7
1,520,601	+				-1.0
1,520,601	+				-1.3
1,520,602	-				-2.9
1,520,602	-				-0.5
1,520,626	+				-2.5
1,520,626	+				+0.6
1,520,626	+				+2.8
1,520,626	+				+0.3
1,520,627	-				+1.2
1,520,627	-				+2.7
1,520,627	-				-1.2
1,520,627	-				-0.0
1,520,706	+				+0.5
1,520,707	-				+1.1
1,520,707	-				+0.9
1,520,707	-				+0.1
1,520,714	+				+0.8
1,520,714	+				+1.7
1,520,763	+				-2.7
1,520,770	+				+1.5
1,520,770	+				+0.6
1,520,771	-				-3.8
1,520,771	-				-2.9
1,520,803	+				+0.0
1,520,803	+				+1.3
1,520,803	+				-1.8
1,520,803	+				+0.8
1,520,803	+				+1.2
1,520,804	-				-2.7
1,520,804	-				+1.4
1,520,804	-				+0.6
1,520,834	+				-2.4
1,520,834	+				-1.8
1,520,835	-				+1.4
1,520,842	-				+2.2
1,520,895	+				+1.5
1,520,896	-				+0.1
1,521,008	+		ABZR87_RS07190	0.13	+1.7
1,521,009	-		ABZR87_RS07190	0.13	-1.7
1,521,020	+		ABZR87_RS07190	0.14	-2.9
1,521,020	+		ABZR87_RS07190	0.14	+0.1
1,521,021	-		ABZR87_RS07190	0.14	-0.3
1,521,021	-		ABZR87_RS07190	0.14	+2.3
1,521,024	+		ABZR87_RS07190	0.14	-1.2
1,521,024	+		ABZR87_RS07190	0.14	-1.2
1,521,024	+		ABZR87_RS07190	0.14	-3.4
1,521,024	+		ABZR87_RS07190	0.14	+0.7
1,521,025	-		ABZR87_RS07190	0.14	+1.6
1,521,025	-		ABZR87_RS07190	0.14	+0.9
1,521,025	-		ABZR87_RS07190	0.14	+0.7
1,521,077	+		ABZR87_RS07190	0.19	-0.6
1,521,077	+		ABZR87_RS07190	0.19	-2.2
1,521,078	-		ABZR87_RS07190	0.19	+0.1
1,521,078	-		ABZR87_RS07190	0.19	-0.3
1,521,096	+		ABZR87_RS07190	0.20	-2.3
1,521,108	+		ABZR87_RS07190	0.21	-0.6
1,521,108	+		ABZR87_RS07190	0.21	+0.7
1,521,108	+		ABZR87_RS07190	0.21	+1.8
1,521,108	+		ABZR87_RS07190	0.21	-0.7
1,521,108	+		ABZR87_RS07190	0.21	+3.7
1,521,108	+		ABZR87_RS07190	0.21	-1.3
1,521,108	+		ABZR87_RS07190	0.21	-1.1
1,521,108	+		ABZR87_RS07190	0.21	+2.5
1,521,108	+		ABZR87_RS07190	0.21	+0.2
1,521,108	+		ABZR87_RS07190	0.21	+0.4
1,521,108	+		ABZR87_RS07190	0.21	-2.0
1,521,109	-		ABZR87_RS07190	0.22	+0.5
1,521,109	-		ABZR87_RS07190	0.22	+0.9
1,521,109	-		ABZR87_RS07190	0.22	-2.7
1,521,109	-		ABZR87_RS07190	0.22	+0.6
1,521,149	+		ABZR87_RS07190	0.25	+2.5
1,521,150	-		ABZR87_RS07190	0.25	-2.1
1,521,150	-		ABZR87_RS07190	0.25	-2.0
1,521,164	+		ABZR87_RS07190	0.26	+1.3
1,521,267	+		ABZR87_RS07190	0.35	-1.8
1,521,267	+		ABZR87_RS07190	0.35	-2.6
1,521,268	-		ABZR87_RS07190	0.35	-2.0
1,521,424	+		ABZR87_RS07190	0.48	-1.7
1,521,424	+		ABZR87_RS07190	0.48	+1.5
1,521,425	-		ABZR87_RS07190	0.49	+1.4
1,521,425	-		ABZR87_RS07190	0.49	-3.5
1,521,480	+		ABZR87_RS07190	0.53	+1.6
1,521,480	+		ABZR87_RS07190	0.53	-0.7
1,521,480	+		ABZR87_RS07190	0.53	-2.4
1,521,480	+		ABZR87_RS07190	0.53	+0.9
1,521,480	+		ABZR87_RS07190	0.53	-0.9
1,521,480	+		ABZR87_RS07190	0.53	+1.9
1,521,481	-		ABZR87_RS07190	0.53	-3.5
1,521,481	-		ABZR87_RS07190	0.53	+0.6
1,521,519	-		ABZR87_RS07190	0.57	+1.5
1,521,539	+		ABZR87_RS07190	0.58	-2.8
1,521,540	-		ABZR87_RS07190	0.58	+0.8
1,521,554	+		ABZR87_RS07190	0.60	-1.6
1,521,554	+		ABZR87_RS07190	0.60	+0.1
1,521,554	+		ABZR87_RS07190	0.60	+0.5
1,521,554	+		ABZR87_RS07190	0.60	-0.8
1,521,554	+		ABZR87_RS07190	0.60	-1.1
1,521,555	-		ABZR87_RS07190	0.60	-0.9
1,521,555	-		ABZR87_RS07190	0.60	+1.5
1,521,555	-		ABZR87_RS07190	0.60	-2.5
1,521,572	+		ABZR87_RS07190	0.61	+0.3
1,521,573	-		ABZR87_RS07190	0.61	-3.1
1,521,585	-		ABZR87_RS07190	0.62	-2.3
1,521,678	+		ABZR87_RS07190	0.70	-3.3
1,521,678	+		ABZR87_RS07190	0.70	+0.7
1,521,678	+		ABZR87_RS07190	0.70	+1.8
1,521,679	-		ABZR87_RS07190	0.70	-1.8
1,521,679	-		ABZR87_RS07190	0.70	-1.2