Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05845

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05840 and ABZR87_RS05845 overlap by 4 nucleotidesABZR87_RS05845 and ABZR87_RS05850 are separated by 87 nucleotides ABZR87_RS05840: ABZR87_RS05840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,244,901 to 1,245,926 _RS05840 ABZR87_RS05845: ABZR87_RS05845 - four-carbon acid sugar kinase family protein, at 1,245,923 to 1,247,044 _RS05845 ABZR87_RS05850: ABZR87_RS05850 - PLP-dependent aminotransferase family protein, at 1,247,132 to 1,248,616 _RS05850 Position (kb) 1245 1246 1247 1248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1245.006 kb on + strand, within ABZR87_RS05840at 1245.006 kb on + strand, within ABZR87_RS05840at 1245.007 kb on - strand, within ABZR87_RS05840at 1245.007 kb on - strand, within ABZR87_RS05840at 1245.168 kb on + strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.466 kb on + strand, within ABZR87_RS05840at 1245.466 kb on + strand, within ABZR87_RS05840at 1245.467 kb on - strand, within ABZR87_RS05840at 1245.467 kb on - strand, within ABZR87_RS05840at 1245.560 kb on + strand, within ABZR87_RS05840at 1245.606 kb on - strand, within ABZR87_RS05840at 1245.611 kb on + strand, within ABZR87_RS05840at 1245.612 kb on - strand, within ABZR87_RS05840at 1245.612 kb on - strand, within ABZR87_RS05840at 1245.736 kb on - strand, within ABZR87_RS05840at 1245.753 kb on + strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.792 kb on + strand, within ABZR87_RS05840at 1245.792 kb on + strand, within ABZR87_RS05840at 1245.944 kb on + strandat 1245.945 kb on - strandat 1245.945 kb on - strandat 1246.037 kb on + strand, within ABZR87_RS05845at 1246.037 kb on + strand, within ABZR87_RS05845at 1246.038 kb on - strand, within ABZR87_RS05845at 1246.100 kb on - strand, within ABZR87_RS05845at 1246.156 kb on + strand, within ABZR87_RS05845at 1246.156 kb on + strand, within ABZR87_RS05845at 1246.157 kb on - strand, within ABZR87_RS05845at 1246.157 kb on - strand, within ABZR87_RS05845at 1246.169 kb on + strand, within ABZR87_RS05845at 1246.169 kb on + strand, within ABZR87_RS05845at 1246.170 kb on - strand, within ABZR87_RS05845at 1246.178 kb on + strand, within ABZR87_RS05845at 1246.178 kb on + strand, within ABZR87_RS05845at 1246.179 kb on - strand, within ABZR87_RS05845at 1246.179 kb on - strand, within ABZR87_RS05845at 1246.217 kb on - strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.508 kb on - strand, within ABZR87_RS05845at 1246.628 kb on + strand, within ABZR87_RS05845at 1246.933 kb on + strandat 1247.026 kb on + strandat 1247.131 kb on + strandat 1247.132 kb on - strandat 1247.132 kb on - strandat 1247.132 kb on - strandat 1247.132 kb on - strandat 1247.281 kb on - strand, within ABZR87_RS05850at 1247.342 kb on + strand, within ABZR87_RS05850at 1247.342 kb on + strand, within ABZR87_RS05850at 1247.343 kb on - strand, within ABZR87_RS05850at 1247.343 kb on - strand, within ABZR87_RS05850at 1247.343 kb on - strand, within ABZR87_RS05850at 1247.343 kb on - strand, within ABZR87_RS05850at 1247.343 kb on - strand, within ABZR87_RS05850at 1247.353 kb on - strand, within ABZR87_RS05850at 1247.353 kb on - strand, within ABZR87_RS05850at 1247.353 kb on - strand, within ABZR87_RS05850at 1247.353 kb on - strand, within ABZR87_RS05850at 1247.458 kb on - strand, within ABZR87_RS05850at 1247.472 kb on + strand, within ABZR87_RS05850at 1247.472 kb on + strand, within ABZR87_RS05850at 1247.473 kb on - strand, within ABZR87_RS05850at 1247.568 kb on + strand, within ABZR87_RS05850at 1247.569 kb on - strand, within ABZR87_RS05850at 1247.569 kb on - strand, within ABZR87_RS05850at 1247.618 kb on + strand, within ABZR87_RS05850at 1247.618 kb on + strand, within ABZR87_RS05850at 1247.618 kb on + strand, within ABZR87_RS05850at 1247.619 kb on - strand, within ABZR87_RS05850at 1247.619 kb on - strand, within ABZR87_RS05850at 1247.710 kb on + strand, within ABZR87_RS05850at 1247.711 kb on - strand, within ABZR87_RS05850at 1247.849 kb on + strand, within ABZR87_RS05850at 1247.849 kb on + strand, within ABZR87_RS05850at 1247.849 kb on + strand, within ABZR87_RS05850at 1247.849 kb on + strand, within ABZR87_RS05850at 1247.849 kb on + strand, within ABZR87_RS05850at 1247.850 kb on - strand, within ABZR87_RS05850at 1247.850 kb on - strand, within ABZR87_RS05850at 1247.925 kb on + strand, within ABZR87_RS05850at 1247.925 kb on + strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1247.926 kb on - strand, within ABZR87_RS05850at 1248.032 kb on + strand, within ABZR87_RS05850at 1248.032 kb on + strand, within ABZR87_RS05850

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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1,245,006 + ABZR87_RS05840 0.10 +1.8
1,245,006 + ABZR87_RS05840 0.10 -1.7
1,245,007 - ABZR87_RS05840 0.10 -1.1
1,245,007 - ABZR87_RS05840 0.10 +1.5
1,245,168 + ABZR87_RS05840 0.26 -0.5
1,245,169 - ABZR87_RS05840 0.26 +0.1
1,245,169 - ABZR87_RS05840 0.26 +0.1
1,245,169 - ABZR87_RS05840 0.26 -3.5
1,245,466 + ABZR87_RS05840 0.55 +1.2
1,245,466 + ABZR87_RS05840 0.55 -0.5
1,245,467 - ABZR87_RS05840 0.55 -1.5
1,245,467 - ABZR87_RS05840 0.55 +0.7
1,245,560 + ABZR87_RS05840 0.64 +1.2
1,245,606 - ABZR87_RS05840 0.69 -2.6
1,245,611 + ABZR87_RS05840 0.69 +1.6
1,245,612 - ABZR87_RS05840 0.69 -3.5
1,245,612 - ABZR87_RS05840 0.69 -2.7
1,245,736 - ABZR87_RS05840 0.81 +1.3
1,245,753 + ABZR87_RS05840 0.83 +1.9
1,245,754 - ABZR87_RS05840 0.83 +1.6
1,245,754 - ABZR87_RS05840 0.83 -1.4
1,245,754 - ABZR87_RS05840 0.83 +1.1
1,245,754 - ABZR87_RS05840 0.83 +1.2
1,245,792 + ABZR87_RS05840 0.87 +1.7
1,245,792 + ABZR87_RS05840 0.87 -0.0
1,245,944 + +2.7
1,245,945 - -1.9
1,245,945 - +0.3
1,246,037 + ABZR87_RS05845 0.10 -1.1
1,246,037 + ABZR87_RS05845 0.10 +0.2
1,246,038 - ABZR87_RS05845 0.10 -0.1
1,246,100 - ABZR87_RS05845 0.16 -3.9
1,246,156 + ABZR87_RS05845 0.21 -2.8
1,246,156 + ABZR87_RS05845 0.21 +1.2
1,246,157 - ABZR87_RS05845 0.21 +0.1
1,246,157 - ABZR87_RS05845 0.21 -0.8
1,246,169 + ABZR87_RS05845 0.22 +1.4
1,246,169 + ABZR87_RS05845 0.22 +1.2
1,246,170 - ABZR87_RS05845 0.22 +0.1
1,246,178 + ABZR87_RS05845 0.23 -1.7
1,246,178 + ABZR87_RS05845 0.23 +0.0
1,246,179 - ABZR87_RS05845 0.23 +1.9
1,246,179 - ABZR87_RS05845 0.23 +2.0
1,246,217 - ABZR87_RS05845 0.26 +2.2
1,246,240 + ABZR87_RS05845 0.28 -1.5
1,246,240 + ABZR87_RS05845 0.28 +0.6
1,246,240 + ABZR87_RS05845 0.28 +0.4
1,246,240 + ABZR87_RS05845 0.28 -3.8
1,246,240 + ABZR87_RS05845 0.28 -2.2
1,246,240 + ABZR87_RS05845 0.28 +0.8
1,246,240 + ABZR87_RS05845 0.28 +1.1
1,246,240 + ABZR87_RS05845 0.28 +0.0
1,246,240 + ABZR87_RS05845 0.28 -0.7
1,246,240 + ABZR87_RS05845 0.28 +1.4
1,246,240 + ABZR87_RS05845 0.28 -1.9
1,246,240 + ABZR87_RS05845 0.28 -1.4
1,246,240 + ABZR87_RS05845 0.28 -0.4
1,246,240 + ABZR87_RS05845 0.28 +1.1
1,246,240 + ABZR87_RS05845 0.28 -3.1
1,246,240 + ABZR87_RS05845 0.28 +0.6
1,246,241 - ABZR87_RS05845 0.28 -0.4
1,246,241 - ABZR87_RS05845 0.28 +0.8
1,246,241 - ABZR87_RS05845 0.28 -2.7
1,246,241 - ABZR87_RS05845 0.28 -1.6
1,246,508 - ABZR87_RS05845 0.52 -0.2
1,246,628 + ABZR87_RS05845 0.63 +0.0
1,246,933 + +2.0
1,247,026 + -2.4
1,247,131 + +0.9
1,247,132 - +1.6
1,247,132 - -2.5
1,247,132 - +0.6
1,247,132 - -0.4
1,247,281 - ABZR87_RS05850 0.10 +0.6
1,247,342 + ABZR87_RS05850 0.14 +1.5
1,247,342 + ABZR87_RS05850 0.14 -0.1
1,247,343 - ABZR87_RS05850 0.14 -1.9
1,247,343 - ABZR87_RS05850 0.14 +0.4
1,247,343 - ABZR87_RS05850 0.14 -2.4
1,247,343 - ABZR87_RS05850 0.14 -2.9
1,247,343 - ABZR87_RS05850 0.14 -2.4
1,247,353 - ABZR87_RS05850 0.15 -3.9
1,247,353 - ABZR87_RS05850 0.15 -1.7
1,247,353 - ABZR87_RS05850 0.15 +1.3
1,247,353 - ABZR87_RS05850 0.15 +0.7
1,247,458 - ABZR87_RS05850 0.22 +0.9
1,247,472 + ABZR87_RS05850 0.23 -0.6
1,247,472 + ABZR87_RS05850 0.23 -0.1
1,247,473 - ABZR87_RS05850 0.23 -0.7
1,247,568 + ABZR87_RS05850 0.29 -0.5
1,247,569 - ABZR87_RS05850 0.29 +0.2
1,247,569 - ABZR87_RS05850 0.29 -2.8
1,247,618 + ABZR87_RS05850 0.33 -2.3
1,247,618 + ABZR87_RS05850 0.33 +1.1
1,247,618 + ABZR87_RS05850 0.33 -0.1
1,247,619 - ABZR87_RS05850 0.33 +1.2
1,247,619 - ABZR87_RS05850 0.33 -1.8
1,247,710 + ABZR87_RS05850 0.39 -4.0
1,247,711 - ABZR87_RS05850 0.39 -0.1
1,247,849 + ABZR87_RS05850 0.48 +0.1
1,247,849 + ABZR87_RS05850 0.48 -0.8
1,247,849 + ABZR87_RS05850 0.48 +1.3
1,247,849 + ABZR87_RS05850 0.48 +0.0
1,247,849 + ABZR87_RS05850 0.48 -1.0
1,247,850 - ABZR87_RS05850 0.48 -2.9
1,247,850 - ABZR87_RS05850 0.48 +0.4
1,247,925 + ABZR87_RS05850 0.53 +0.7
1,247,925 + ABZR87_RS05850 0.53 +0.8
1,247,926 - ABZR87_RS05850 0.53 +1.6
1,247,926 - ABZR87_RS05850 0.53 +0.8
1,247,926 - ABZR87_RS05850 0.53 -1.5
1,247,926 - ABZR87_RS05850 0.53 +0.1
1,247,926 - ABZR87_RS05850 0.53 -0.1
1,247,926 - ABZR87_RS05850 0.53 -2.1
1,248,032 + ABZR87_RS05850 0.61 +1.2
1,248,032 + ABZR87_RS05850 0.61 +1.4

Or see this region's nucleotide sequence