Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04590 and ABZR87_RS04595 are separated by 248 nucleotides ABZR87_RS04595 and ABZR87_RS04600 are separated by 35 nucleotides ABZR87_RS04600 and ABZR87_RS04605 are separated by 26 nucleotides ABZR87_RS04605 and ABZR87_RS04610 are separated by 234 nucleotides
ABZR87_RS04590: ABZR87_RS04590 - S-layer protein, at 960,539 to 962,197
_RS04590
ABZR87_RS04595: ABZR87_RS04595 - hypothetical protein, at 962,446 to 962,652
_RS04595
ABZR87_RS04600: ABZR87_RS04600 - DUF4142 domain-containing protein, at 962,688 to 963,227
_RS04600
ABZR87_RS04605: ABZR87_RS04605 - DUF2795 domain-containing protein, at 963,254 to 963,640
_RS04605
ABZR87_RS04610: ABZR87_RS04610 - DNA damage-inducible protein D, at 963,875 to 964,744
_RS04610
Position (kb) 962
963
964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 961.785 kb on + strand, within ABZR87_RS04590 at 961.786 kb on - strand, within ABZR87_RS04590 at 961.827 kb on + strand, within ABZR87_RS04590 at 961.828 kb on - strand, within ABZR87_RS04590 at 962.133 kb on + strand at 962.133 kb on + strand at 962.134 kb on - strand at 962.134 kb on - strand at 962.134 kb on - strand at 962.134 kb on - strand at 962.134 kb on - strand at 962.377 kb on - strand at 962.469 kb on + strand, within ABZR87_RS04595 at 962.470 kb on - strand, within ABZR87_RS04595 at 962.470 kb on - strand, within ABZR87_RS04595 at 962.646 kb on + strand at 962.855 kb on - strand, within ABZR87_RS04600 at 962.984 kb on + strand, within ABZR87_RS04600 at 962.985 kb on - strand, within ABZR87_RS04600 at 962.985 kb on - strand, within ABZR87_RS04600 at 963.120 kb on - strand, within ABZR87_RS04600 at 963.300 kb on + strand, within ABZR87_RS04605 at 963.301 kb on - strand, within ABZR87_RS04605 at 963.317 kb on - strand, within ABZR87_RS04605 at 963.759 kb on + strand at 963.759 kb on + strand at 963.760 kb on - strand at 963.778 kb on - strand at 963.841 kb on + strand at 963.855 kb on + strand at 963.856 kb on - strand at 964.218 kb on + strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 961,785 + ABZR87_RS04590 0.75 +1.6 961,786 - ABZR87_RS04590 0.75 -1.2 961,827 + ABZR87_RS04590 0.78 +2.1 961,828 - ABZR87_RS04590 0.78 -0.8 962,133 + +1.2 962,133 + -4.2 962,134 - +0.5 962,134 - -2.6 962,134 - -3.3 962,134 - -2.4 962,134 - +0.1 962,377 - +1.2 962,469 + ABZR87_RS04595 0.11 -2.6 962,470 - ABZR87_RS04595 0.12 +0.8 962,470 - ABZR87_RS04595 0.12 +1.2 962,646 + -1.7 962,855 - ABZR87_RS04600 0.31 +1.5 962,984 + ABZR87_RS04600 0.55 +0.9 962,985 - ABZR87_RS04600 0.55 -1.8 962,985 - ABZR87_RS04600 0.55 -0.6 963,120 - ABZR87_RS04600 0.80 +1.5 963,300 + ABZR87_RS04605 0.12 -2.9 963,301 - ABZR87_RS04605 0.12 +0.8 963,317 - ABZR87_RS04605 0.16 +2.0 963,759 + +0.7 963,759 + +2.7 963,760 - -2.0 963,778 - -1.2 963,841 + -0.9 963,855 + +1.4 963,856 - -2.6 964,218 + ABZR87_RS04610 0.39 -1.1 964,219 - ABZR87_RS04610 0.40 -1.5 964,219 - ABZR87_RS04610 0.40 +2.4 964,219 - ABZR87_RS04610 0.40 +0.3
Or see this region's nucleotide sequence