Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04515 and ABZR87_RS04520 are separated by 15 nucleotides ABZR87_RS04520 and ABZR87_RS04525 are separated by 655 nucleotides
ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235
_RS04515
ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874
_RS04520
ABZR87_RS04525: ABZR87_RS04525 - sensor histidine kinase KdpD, at 944,530 to 947,346
_RS04525
Position (kb) 943
944 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 943.107 kb on + strand at 943.155 kb on + strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.233 kb on + strand at 943.233 kb on + strand at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.368 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.495 kb on - strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.571 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.826 kb on + strand at 943.826 kb on + strand at 943.826 kb on + strand at 943.827 kb on - strand at 943.979 kb on + strand at 944.222 kb on + strand at 944.222 kb on + strand at 944.223 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.522 kb on + strand at 944.522 kb on + strand at 944.522 kb on + strand at 944.523 kb on - strand at 944.523 kb on - strand at 944.620 kb on + strand at 944.621 kb on - strand at 944.621 kb on - strand at 944.642 kb on + strand at 944.642 kb on + strand at 944.642 kb on + strand at 944.643 kb on - strand at 944.654 kb on - strand at 944.654 kb on - strand at 944.791 kb on + strand at 944.792 kb on - strand at 944.792 kb on - strand at 944.792 kb on - strand at 944.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 942,294 + ABZR87_RS04515 0.58 -1.4 942,294 + ABZR87_RS04515 0.58 +0.9 942,294 + ABZR87_RS04515 0.58 -1.5 942,294 + ABZR87_RS04515 0.58 +0.4 942,294 + ABZR87_RS04515 0.58 -1.9 942,295 - ABZR87_RS04515 0.58 +0.1 942,295 - ABZR87_RS04515 0.58 +1.6 942,295 - ABZR87_RS04515 0.58 -2.4 942,295 - ABZR87_RS04515 0.58 -0.1 942,295 - ABZR87_RS04515 0.58 +0.4 942,342 + ABZR87_RS04515 0.60 -1.3 942,342 + ABZR87_RS04515 0.60 -0.4 942,342 + ABZR87_RS04515 0.60 +0.2 942,343 - ABZR87_RS04515 0.60 -2.8 942,343 - ABZR87_RS04515 0.60 +0.2 942,945 + ABZR87_RS04515 0.87 -0.4 942,945 + ABZR87_RS04515 0.87 +0.8 942,945 + ABZR87_RS04515 0.87 +1.6 942,981 + ABZR87_RS04515 0.89 -0.9 942,981 + ABZR87_RS04515 0.89 -3.3 943,107 + -2.1 943,155 + +2.1 943,156 - -3.8 943,156 - -0.3 943,156 - -2.5 943,233 + +0.5 943,233 + +1.9 943,333 + ABZR87_RS04520 0.13 -3.8 943,333 + ABZR87_RS04520 0.13 -3.2 943,333 + ABZR87_RS04520 0.13 +0.1 943,368 + ABZR87_RS04520 0.19 +0.2 943,494 + ABZR87_RS04520 0.39 -3.0 943,494 + ABZR87_RS04520 0.39 +2.1 943,494 + ABZR87_RS04520 0.39 -4.4 943,495 - ABZR87_RS04520 0.39 -2.5 943,533 + ABZR87_RS04520 0.45 +0.3 943,533 + ABZR87_RS04520 0.45 -0.3 943,533 + ABZR87_RS04520 0.45 -0.2 943,534 - ABZR87_RS04520 0.45 +2.0 943,534 - ABZR87_RS04520 0.45 +1.4 943,571 + ABZR87_RS04520 0.51 -0.4 943,700 + ABZR87_RS04520 0.72 -0.2 943,700 + ABZR87_RS04520 0.72 -0.5 943,701 - ABZR87_RS04520 0.72 -0.4 943,701 - ABZR87_RS04520 0.72 +1.8 943,720 - ABZR87_RS04520 0.75 -0.5 943,720 - ABZR87_RS04520 0.75 +0.9 943,826 + +1.0 943,826 + +0.2 943,826 + +2.2 943,827 - +0.4 943,979 + +0.0 944,222 + +0.4 944,222 + -2.4 944,223 - +2.3 944,297 - +2.0 944,297 - +2.9 944,297 - +1.9 944,297 - +1.6 944,522 + -3.8 944,522 + -2.8 944,522 + -0.1 944,523 - -1.5 944,523 - +0.9 944,620 + -2.6 944,621 - +0.1 944,621 - -1.5 944,642 + +1.0 944,642 + +0.7 944,642 + -0.5 944,643 - +1.9 944,654 - -0.1 944,654 - -3.1 944,791 + +0.3 944,792 - +0.9 944,792 - -2.1 944,792 - -2.7 944,792 - -2.8
Or see this region's nucleotide sequence