Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04505

Experiment: soil EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04495 and ABZR87_RS04500 are separated by 31 nucleotidesABZR87_RS04500 and ABZR87_RS04505 overlap by 4 nucleotidesABZR87_RS04505 and ABZR87_RS04510 are separated by 19 nucleotides ABZR87_RS04495: ABZR87_RS04495 - TorF family putative porin, at 938,019 to 938,816 _RS04495 ABZR87_RS04500: ABZR87_RS04500 - hypothetical protein, at 938,848 to 938,973 _RS04500 ABZR87_RS04505: ABZR87_RS04505 - K(+)-transporting ATPase subunit F, at 938,970 to 939,059 _RS04505 ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851 _RS04510 Position (kb) 938 939 940Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 937.998 kb on - strandat 937.998 kb on - strandat 938.184 kb on + strand, within ABZR87_RS04495at 938.185 kb on - strand, within ABZR87_RS04495at 938.190 kb on + strand, within ABZR87_RS04495at 938.191 kb on - strand, within ABZR87_RS04495at 938.245 kb on - strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.356 kb on - strand, within ABZR87_RS04495at 938.356 kb on - strand, within ABZR87_RS04495at 938.406 kb on + strand, within ABZR87_RS04495at 938.407 kb on - strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.412 kb on + strand, within ABZR87_RS04495at 938.425 kb on - strand, within ABZR87_RS04495at 938.437 kb on - strand, within ABZR87_RS04495at 938.437 kb on - strand, within ABZR87_RS04495at 938.463 kb on + strand, within ABZR87_RS04495at 938.500 kb on - strand, within ABZR87_RS04495at 938.500 kb on - strand, within ABZR87_RS04495at 938.538 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.597 kb on + strand, within ABZR87_RS04495at 938.597 kb on + strand, within ABZR87_RS04495at 938.598 kb on - strand, within ABZR87_RS04495at 938.598 kb on - strand, within ABZR87_RS04495at 938.619 kb on + strand, within ABZR87_RS04495at 938.655 kb on + strand, within ABZR87_RS04495at 938.655 kb on + strand, within ABZR87_RS04495at 938.656 kb on - strand, within ABZR87_RS04495at 938.656 kb on - strand, within ABZR87_RS04495at 938.719 kb on - strand, within ABZR87_RS04495at 938.719 kb on - strand, within ABZR87_RS04495at 938.749 kb on - strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.847 kb on + strandat 938.848 kb on - strandat 938.848 kb on - strandat 938.848 kb on - strandat 938.861 kb on - strand, within ABZR87_RS04500at 938.861 kb on - strand, within ABZR87_RS04500at 938.861 kb on - strand, within ABZR87_RS04500at 938.982 kb on + strand, within ABZR87_RS04505at 938.982 kb on + strand, within ABZR87_RS04505at 938.982 kb on + strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.058 kb on - strandat 939.058 kb on - strandat 939.109 kb on + strandat 939.109 kb on + strandat 939.110 kb on - strandat 939.151 kb on + strandat 939.151 kb on + strandat 939.151 kb on + strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.153 kb on + strandat 939.153 kb on + strandat 939.153 kb on + strandat 939.154 kb on - strandat 939.154 kb on - strandat 939.221 kb on - strandat 939.269 kb on - strand, within ABZR87_RS04510at 939.316 kb on + strand, within ABZR87_RS04510at 939.317 kb on - strand, within ABZR87_RS04510at 939.436 kb on + strand, within ABZR87_RS04510at 939.437 kb on - strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.610 kb on + strand, within ABZR87_RS04510at 939.610 kb on + strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.685 kb on + strand, within ABZR87_RS04510at 939.686 kb on - strand, within ABZR87_RS04510at 939.686 kb on - strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510at 939.975 kb on + strand, within ABZR87_RS04510at 939.975 kb on + strand, within ABZR87_RS04510at 939.975 kb on + strand, within ABZR87_RS04510at 939.975 kb on + strand, within ABZR87_RS04510at 939.975 kb on + strand, within ABZR87_RS04510at 939.976 kb on - strand, within ABZR87_RS04510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
remove
937,998 - -2.3
937,998 - -0.8
938,184 + ABZR87_RS04495 0.21 -3.3
938,185 - ABZR87_RS04495 0.21 -2.0
938,190 + ABZR87_RS04495 0.21 +1.0
938,191 - ABZR87_RS04495 0.22 -4.1
938,245 - ABZR87_RS04495 0.28 +0.2
938,265 + ABZR87_RS04495 0.31 -3.8
938,265 + ABZR87_RS04495 0.31 +1.5
938,265 + ABZR87_RS04495 0.31 -4.5
938,265 + ABZR87_RS04495 0.31 -3.3
938,266 - ABZR87_RS04495 0.31 +0.8
938,266 - ABZR87_RS04495 0.31 +0.1
938,266 - ABZR87_RS04495 0.31 +0.3
938,355 + ABZR87_RS04495 0.42 -0.6
938,355 + ABZR87_RS04495 0.42 -2.2
938,355 + ABZR87_RS04495 0.42 +1.1
938,355 + ABZR87_RS04495 0.42 -1.8
938,356 - ABZR87_RS04495 0.42 +1.1
938,356 - ABZR87_RS04495 0.42 -0.1
938,406 + ABZR87_RS04495 0.48 +0.2
938,407 - ABZR87_RS04495 0.49 -3.6
938,409 + ABZR87_RS04495 0.49 -3.8
938,409 + ABZR87_RS04495 0.49 -1.0
938,409 + ABZR87_RS04495 0.49 -2.2
938,409 + ABZR87_RS04495 0.49 -2.3
938,410 - ABZR87_RS04495 0.49 -4.8
938,410 - ABZR87_RS04495 0.49 +0.7
938,410 - ABZR87_RS04495 0.49 -3.7
938,410 - ABZR87_RS04495 0.49 +1.4
938,410 - ABZR87_RS04495 0.49 +0.5
938,410 - ABZR87_RS04495 0.49 -0.9
938,410 - ABZR87_RS04495 0.49 +1.1
938,412 + ABZR87_RS04495 0.49 -1.8
938,425 - ABZR87_RS04495 0.51 -2.7
938,437 - ABZR87_RS04495 0.52 -3.6
938,437 - ABZR87_RS04495 0.52 -2.1
938,463 + ABZR87_RS04495 0.56 -3.1
938,500 - ABZR87_RS04495 0.60 +1.6
938,500 - ABZR87_RS04495 0.60 -0.9
938,538 - ABZR87_RS04495 0.65 +0.2
938,554 - ABZR87_RS04495 0.67 -0.4
938,554 - ABZR87_RS04495 0.67 -1.1
938,554 - ABZR87_RS04495 0.67 +0.0
938,597 + ABZR87_RS04495 0.72 -1.0
938,597 + ABZR87_RS04495 0.72 -0.9
938,598 - ABZR87_RS04495 0.73 -1.3
938,598 - ABZR87_RS04495 0.73 -0.8
938,619 + ABZR87_RS04495 0.75 -4.2
938,655 + ABZR87_RS04495 0.80 +0.5
938,655 + ABZR87_RS04495 0.80 -2.3
938,656 - ABZR87_RS04495 0.80 -1.8
938,656 - ABZR87_RS04495 0.80 -1.0
938,719 - ABZR87_RS04495 0.88 +0.5
938,719 - ABZR87_RS04495 0.88 +0.3
938,749 - -0.3
938,769 + -2.9
938,769 + +0.8
938,769 + -2.3
938,769 + +0.1
938,769 + -2.9
938,769 + +0.0
938,770 - -3.7
938,770 - -1.3
938,770 - -0.8
938,770 - -1.1
938,770 - -1.9
938,770 - +0.8
938,770 - +0.5
938,847 + +0.0
938,848 - +2.1
938,848 - +0.8
938,848 - +0.1
938,861 - ABZR87_RS04500 0.10 +1.0
938,861 - ABZR87_RS04500 0.10 +0.4
938,861 - ABZR87_RS04500 0.10 +1.6
938,982 + ABZR87_RS04505 0.13 -2.9
938,982 + ABZR87_RS04505 0.13 -2.2
938,982 + ABZR87_RS04505 0.13 -3.2
938,983 - ABZR87_RS04505 0.14 +0.3
938,983 - ABZR87_RS04505 0.14 +0.5
938,983 - ABZR87_RS04505 0.14 -0.9
938,983 - ABZR87_RS04505 0.14 -3.3
938,983 - ABZR87_RS04505 0.14 +0.5
939,021 + ABZR87_RS04505 0.57 +0.1
939,021 + ABZR87_RS04505 0.57 -1.4
939,021 + ABZR87_RS04505 0.57 -2.3
939,058 - +1.5
939,058 - +0.2
939,109 + -1.8
939,109 + +2.5
939,110 - +0.7
939,151 + -1.6
939,151 + -1.2
939,151 + +0.2
939,152 - -2.8
939,152 - +1.3
939,152 - +0.6
939,152 - +2.2
939,152 - -2.7
939,152 - +1.8
939,152 - -1.1
939,153 + -1.7
939,153 + +2.0
939,153 + +1.2
939,154 - +0.2
939,154 - +0.4
939,221 - +0.3
939,269 - ABZR87_RS04510 0.11 -1.1
939,316 + ABZR87_RS04510 0.13 -2.7
939,317 - ABZR87_RS04510 0.13 +0.1
939,436 + ABZR87_RS04510 0.20 -1.1
939,437 - ABZR87_RS04510 0.20 +1.1
939,460 + ABZR87_RS04510 0.21 +1.4
939,460 + ABZR87_RS04510 0.21 -0.1
939,460 + ABZR87_RS04510 0.21 +2.7
939,460 + ABZR87_RS04510 0.21 +0.5
939,461 - ABZR87_RS04510 0.22 -1.4
939,461 - ABZR87_RS04510 0.22 -0.7
939,461 - ABZR87_RS04510 0.22 -1.6
939,610 + ABZR87_RS04510 0.30 -2.3
939,610 + ABZR87_RS04510 0.30 +2.1
939,611 - ABZR87_RS04510 0.30 -2.8
939,611 - ABZR87_RS04510 0.30 +1.8
939,611 - ABZR87_RS04510 0.30 +2.6
939,611 - ABZR87_RS04510 0.30 -3.1
939,611 - ABZR87_RS04510 0.30 -4.0
939,611 - ABZR87_RS04510 0.30 -1.9
939,685 + ABZR87_RS04510 0.34 +0.6
939,686 - ABZR87_RS04510 0.34 +2.9
939,686 - ABZR87_RS04510 0.34 +1.1
939,718 + ABZR87_RS04510 0.36 -2.2
939,718 + ABZR87_RS04510 0.36 -0.6
939,718 + ABZR87_RS04510 0.36 +1.0
939,719 - ABZR87_RS04510 0.36 +2.4
939,719 - ABZR87_RS04510 0.36 -3.4
939,719 - ABZR87_RS04510 0.36 +1.1
939,975 + ABZR87_RS04510 0.51 +0.6
939,975 + ABZR87_RS04510 0.51 +0.1
939,975 + ABZR87_RS04510 0.51 -2.8
939,975 + ABZR87_RS04510 0.51 +0.6
939,975 + ABZR87_RS04510 0.51 +0.5
939,976 - ABZR87_RS04510 0.51 +0.1

Or see this region's nucleotide sequence