Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04410 and ABZR87_RS04415 are separated by 189 nucleotides ABZR87_RS04415 and ABZR87_RS04420 are separated by 75 nucleotides ABZR87_RS04420 and ABZR87_RS04425 are separated by 150 nucleotides ABZR87_RS04425 and ABZR87_RS04430 are separated by 193 nucleotides
ABZR87_RS04410: ABZR87_RS04410 - chromate transporter, at 925,952 to 927,124
_RS04410
ABZR87_RS04415: ABZR87_RS04415 - hypothetical protein, at 927,314 to 927,463
_RS04415
ABZR87_RS04420: ABZR87_RS04420 - hypothetical protein, at 927,539 to 927,760
_RS04420
ABZR87_RS04425: ABZR87_RS04425 - hypothetical protein, at 927,911 to 928,216
_RS04425
ABZR87_RS04430: ABZR87_RS04430 - hypothetical protein, at 928,410 to 929,231
_RS04430
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 927.104 kb on + strand at 927.104 kb on + strand at 927.104 kb on + strand at 927.105 kb on - strand at 927.187 kb on + strand at 927.275 kb on - strand at 927.371 kb on + strand, within ABZR87_RS04415 at 927.371 kb on + strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.541 kb on - strand at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.780 kb on + strand at 927.780 kb on + strand at 927.780 kb on + strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.807 kb on - strand at 927.859 kb on + strand at 928.098 kb on + strand, within ABZR87_RS04425 at 928.098 kb on + strand, within ABZR87_RS04425 at 928.099 kb on - strand, within ABZR87_RS04425 at 928.099 kb on - strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.312 kb on + strand at 928.312 kb on + strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.338 kb on - strand at 928.365 kb on + strand at 928.365 kb on + strand at 928.365 kb on + strand at 928.366 kb on - strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.459 kb on + strand at 928.460 kb on - strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.472 kb on - strand at 928.573 kb on + strand, within ABZR87_RS04430 at 928.643 kb on + strand, within ABZR87_RS04430 at 928.644 kb on - strand, within ABZR87_RS04430 at 928.717 kb on + strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.791 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.944 kb on - strand, within ABZR87_RS04430 at 929.015 kb on + strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 927,104 + +1.0 927,104 + +1.0 927,104 + -1.9 927,105 - -1.7 927,187 + -3.7 927,275 - +0.8 927,371 + ABZR87_RS04415 0.38 -1.4 927,371 + ABZR87_RS04415 0.38 +0.9 927,372 - ABZR87_RS04415 0.39 -1.4 927,372 - ABZR87_RS04415 0.39 -4.1 927,372 - ABZR87_RS04415 0.39 -0.2 927,372 - ABZR87_RS04415 0.39 -0.8 927,372 - ABZR87_RS04415 0.39 -0.3 927,540 + -0.4 927,540 + +1.5 927,540 + +0.5 927,540 + -1.0 927,540 + +2.2 927,540 + +0.8 927,540 + +1.6 927,540 + +2.9 927,541 - +0.2 927,673 + ABZR87_RS04420 0.60 -3.1 927,673 + ABZR87_RS04420 0.60 -3.1 927,673 + ABZR87_RS04420 0.60 +0.3 927,673 + ABZR87_RS04420 0.60 +0.4 927,673 + ABZR87_RS04420 0.60 +0.7 927,673 + ABZR87_RS04420 0.60 -0.4 927,673 + ABZR87_RS04420 0.60 +1.9 927,674 - ABZR87_RS04420 0.61 +0.9 927,674 - ABZR87_RS04420 0.61 +0.8 927,674 - ABZR87_RS04420 0.61 -2.5 927,780 + -0.7 927,780 + -0.1 927,780 + -1.5 927,781 - +0.5 927,781 - +1.3 927,781 - -3.4 927,781 - +2.7 927,781 - -2.2 927,807 - -0.0 927,859 + -0.3 928,098 + ABZR87_RS04425 0.61 -0.6 928,098 + ABZR87_RS04425 0.61 -2.7 928,099 - ABZR87_RS04425 0.61 +0.7 928,099 - ABZR87_RS04425 0.61 +0.0 928,167 + ABZR87_RS04425 0.84 -1.4 928,167 + ABZR87_RS04425 0.84 +0.2 928,167 + ABZR87_RS04425 0.84 +0.5 928,167 + ABZR87_RS04425 0.84 -0.8 928,167 + ABZR87_RS04425 0.84 -3.3 928,167 + ABZR87_RS04425 0.84 -0.3 928,168 - ABZR87_RS04425 0.84 -3.5 928,168 - ABZR87_RS04425 0.84 +1.7 928,168 - ABZR87_RS04425 0.84 -3.9 928,168 - ABZR87_RS04425 0.84 -2.6 928,168 - ABZR87_RS04425 0.84 -1.6 928,168 - ABZR87_RS04425 0.84 +0.8 928,312 + -2.8 928,312 + +2.1 928,313 - +0.2 928,313 - +0.4 928,313 - -4.0 928,313 - +0.5 928,313 - +0.1 928,313 - +2.2 928,314 + +0.7 928,314 + +0.3 928,314 + -3.6 928,314 + -1.0 928,314 + -3.5 928,315 - -0.3 928,315 - -1.5 928,315 - -1.4 928,315 - +1.7 928,315 - +0.7 928,315 - +1.7 928,315 - +0.3 928,338 - -0.3 928,365 + +0.9 928,365 + +0.7 928,365 + +0.7 928,366 - -2.4 928,444 + +2.5 928,444 + +0.4 928,444 + -2.4 928,444 + +0.0 928,444 + +1.1 928,444 + +1.0 928,444 + -1.4 928,445 - +0.5 928,445 - -4.2 928,445 - -0.8 928,445 - -4.2 928,459 + -1.8 928,460 - +0.9 928,471 + +0.4 928,471 + +0.1 928,471 + +0.8 928,471 + +0.3 928,472 - -2.4 928,573 + ABZR87_RS04430 0.20 +1.9 928,643 + ABZR87_RS04430 0.28 -3.2 928,644 - ABZR87_RS04430 0.28 +2.1 928,717 + ABZR87_RS04430 0.37 +0.6 928,718 - ABZR87_RS04430 0.37 -0.5 928,718 - ABZR87_RS04430 0.37 -1.0 928,779 + ABZR87_RS04430 0.45 -1.7 928,779 + ABZR87_RS04430 0.45 +0.6 928,780 - ABZR87_RS04430 0.45 +1.7 928,780 - ABZR87_RS04430 0.45 -0.4 928,780 - ABZR87_RS04430 0.45 -1.6 928,791 + ABZR87_RS04430 0.46 -0.4 928,813 + ABZR87_RS04430 0.49 -0.6 928,813 + ABZR87_RS04430 0.49 +1.1 928,813 + ABZR87_RS04430 0.49 -2.1 928,813 + ABZR87_RS04430 0.49 +0.4 928,813 + ABZR87_RS04430 0.49 -3.4 928,813 + ABZR87_RS04430 0.49 +0.0 928,813 + ABZR87_RS04430 0.49 -0.4 928,813 + ABZR87_RS04430 0.49 +3.5 928,814 - ABZR87_RS04430 0.49 +0.3 928,814 - ABZR87_RS04430 0.49 -2.2 928,814 - ABZR87_RS04430 0.49 +1.0 928,814 - ABZR87_RS04430 0.49 -3.3 928,814 - ABZR87_RS04430 0.49 +1.7 928,814 - ABZR87_RS04430 0.49 +2.0 928,814 - ABZR87_RS04430 0.49 -0.6 928,944 - ABZR87_RS04430 0.65 -3.1 929,015 + ABZR87_RS04430 0.74 +1.6 929,016 - ABZR87_RS04430 0.74 -2.9 929,016 - ABZR87_RS04430 0.74 +0.1 929,081 - ABZR87_RS04430 0.82 -2.8 929,081 - ABZR87_RS04430 0.82 -0.9 929,214 + +1.6 929,214 + +0.5 929,214 + +0.9 929,214 + -0.2 929,215 - +1.3
Or see this region's nucleotide sequence