Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03910

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03905 and ABZR87_RS03910 are separated by 7 nucleotidesABZR87_RS03910 and ABZR87_RS03915 are separated by 758 nucleotides ABZR87_RS03905: ABZR87_RS03905 - pyruvate kinase, at 807,560 to 809,038 _RS03905 ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530 _RS03910 ABZR87_RS03915: ABZR87_RS03915 - UvrD-helicase domain-containing protein, at 811,289 to 813,421 _RS03915 Position (kb) 809 810 811Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 808.458 kb on - strand, within ABZR87_RS03905at 808.572 kb on - strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 809.419 kb on + strand, within ABZR87_RS03910at 809.419 kb on + strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.422 kb on + strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.522 kb on - strand, within ABZR87_RS03910at 809.600 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.609 kb on + strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 810.208 kb on + strand, within ABZR87_RS03910at 810.208 kb on + strand, within ABZR87_RS03910at 810.208 kb on + strand, within ABZR87_RS03910at 810.208 kb on + strand, within ABZR87_RS03910at 810.208 kb on + strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.209 kb on - strand, within ABZR87_RS03910at 810.259 kb on + strand, within ABZR87_RS03910at 810.259 kb on + strand, within ABZR87_RS03910at 810.259 kb on + strand, within ABZR87_RS03910at 810.259 kb on + strand, within ABZR87_RS03910at 810.260 kb on - strand, within ABZR87_RS03910at 810.260 kb on - strand, within ABZR87_RS03910at 810.262 kb on + strand, within ABZR87_RS03910at 810.262 kb on + strand, within ABZR87_RS03910at 810.262 kb on + strand, within ABZR87_RS03910at 810.262 kb on + strand, within ABZR87_RS03910at 810.263 kb on - strand, within ABZR87_RS03910at 810.263 kb on - strand, within ABZR87_RS03910at 810.263 kb on - strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.358 kb on + strand, within ABZR87_RS03910at 810.410 kb on + strandat 810.410 kb on + strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.412 kb on + strandat 810.412 kb on + strandat 810.429 kb on - strandat 810.429 kb on - strandat 810.541 kb on + strandat 810.541 kb on + strandat 810.542 kb on - strandat 810.542 kb on - strandat 810.553 kb on + strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.563 kb on + strandat 810.563 kb on + strandat 810.954 kb on + strandat 810.954 kb on + strandat 810.954 kb on + strandat 811.417 kb on + strandat 811.417 kb on + strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.419 kb on + strandat 811.419 kb on + strandat 811.420 kb on - strandat 811.420 kb on - strandat 811.420 kb on - strandat 811.480 kb on + strandat 811.480 kb on + strandat 811.481 kb on - strandat 811.481 kb on - strandat 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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808,458 - ABZR87_RS03905 0.61 +1.3
808,572 - ABZR87_RS03905 0.68 -3.9
808,685 + ABZR87_RS03905 0.76 +1.3
808,685 + ABZR87_RS03905 0.76 -0.8
808,685 + ABZR87_RS03905 0.76 +0.4
808,685 + ABZR87_RS03905 0.76 +1.8
808,686 - ABZR87_RS03905 0.76 +0.8
808,686 - ABZR87_RS03905 0.76 +1.1
808,686 - ABZR87_RS03905 0.76 +2.5
809,419 + ABZR87_RS03910 0.25 +2.2
809,419 + ABZR87_RS03910 0.25 -0.4
809,420 - ABZR87_RS03910 0.25 +2.6
809,420 - ABZR87_RS03910 0.25 +2.0
809,420 - ABZR87_RS03910 0.25 -2.9
809,420 - ABZR87_RS03910 0.25 +1.9
809,420 - ABZR87_RS03910 0.25 +1.5
809,422 + ABZR87_RS03910 0.25 -3.3
809,423 - ABZR87_RS03910 0.25 -0.8
809,423 - ABZR87_RS03910 0.25 -0.1
809,452 + ABZR87_RS03910 0.27 +2.4
809,452 + ABZR87_RS03910 0.27 +0.5
809,452 + ABZR87_RS03910 0.27 +1.6
809,452 + ABZR87_RS03910 0.27 -1.3
809,452 + ABZR87_RS03910 0.27 +1.7
809,452 + ABZR87_RS03910 0.27 +2.0
809,453 - ABZR87_RS03910 0.27 +0.5
809,453 - ABZR87_RS03910 0.27 +0.1
809,453 - ABZR87_RS03910 0.27 +0.3
809,453 - ABZR87_RS03910 0.27 -1.8
809,453 - ABZR87_RS03910 0.27 -1.7
809,453 - ABZR87_RS03910 0.27 -2.9
809,453 - ABZR87_RS03910 0.27 +2.7
809,522 - ABZR87_RS03910 0.32 +0.0
809,600 + ABZR87_RS03910 0.37 -1.4
809,608 + ABZR87_RS03910 0.38 -2.4
809,608 + ABZR87_RS03910 0.38 +1.2
809,608 + ABZR87_RS03910 0.38 +0.5
809,608 + ABZR87_RS03910 0.38 -3.7
809,609 + ABZR87_RS03910 0.38 +2.8
809,609 - ABZR87_RS03910 0.38 -3.1
809,609 - ABZR87_RS03910 0.38 -1.6
809,614 + ABZR87_RS03910 0.38 +2.0
809,614 + ABZR87_RS03910 0.38 +2.2
809,615 - ABZR87_RS03910 0.38 -0.6
809,615 - ABZR87_RS03910 0.38 +1.2
809,615 - ABZR87_RS03910 0.38 -3.3
809,615 - ABZR87_RS03910 0.38 +1.3
809,615 - ABZR87_RS03910 0.38 +0.8
809,734 + ABZR87_RS03910 0.46 -1.8
809,734 + ABZR87_RS03910 0.46 -0.2
809,734 + ABZR87_RS03910 0.46 -3.1
809,734 + ABZR87_RS03910 0.46 +1.3
809,734 + ABZR87_RS03910 0.46 +2.2
809,735 - ABZR87_RS03910 0.46 +2.4
809,735 - ABZR87_RS03910 0.46 +1.3
809,735 - ABZR87_RS03910 0.46 -1.1
809,735 - ABZR87_RS03910 0.46 +2.8
809,741 - ABZR87_RS03910 0.47 -2.7
809,741 - ABZR87_RS03910 0.47 -3.6
809,824 + ABZR87_RS03910 0.52 -0.4
809,824 + ABZR87_RS03910 0.52 +0.2
809,825 - ABZR87_RS03910 0.52 -1.7
809,825 - ABZR87_RS03910 0.52 +0.3
809,825 - ABZR87_RS03910 0.52 +2.5
810,208 + ABZR87_RS03910 0.78 +2.1
810,208 + ABZR87_RS03910 0.78 -2.8
810,208 + ABZR87_RS03910 0.78 -1.5
810,208 + ABZR87_RS03910 0.78 +1.9
810,208 + ABZR87_RS03910 0.78 +1.0
810,209 - ABZR87_RS03910 0.78 +0.1
810,209 - ABZR87_RS03910 0.78 -1.4
810,209 - ABZR87_RS03910 0.78 +2.1
810,209 - ABZR87_RS03910 0.78 -1.6
810,209 - ABZR87_RS03910 0.78 +0.3
810,209 - ABZR87_RS03910 0.78 +1.9
810,209 - ABZR87_RS03910 0.78 +0.2
810,209 - ABZR87_RS03910 0.78 -2.6
810,209 - ABZR87_RS03910 0.78 -1.0
810,209 - ABZR87_RS03910 0.78 -1.7
810,259 + ABZR87_RS03910 0.82 +1.0
810,259 + ABZR87_RS03910 0.82 +0.8
810,259 + ABZR87_RS03910 0.82 +0.6
810,259 + ABZR87_RS03910 0.82 -0.1
810,260 - ABZR87_RS03910 0.82 -0.3
810,260 - ABZR87_RS03910 0.82 +3.4
810,262 + ABZR87_RS03910 0.82 +1.3
810,262 + ABZR87_RS03910 0.82 +2.2
810,262 + ABZR87_RS03910 0.82 +0.6
810,262 + ABZR87_RS03910 0.82 +0.2
810,263 - ABZR87_RS03910 0.82 +0.6
810,263 - ABZR87_RS03910 0.82 +0.5
810,263 - ABZR87_RS03910 0.82 +1.3
810,295 + ABZR87_RS03910 0.84 +0.6
810,295 + ABZR87_RS03910 0.84 -3.3
810,295 + ABZR87_RS03910 0.84 +1.1
810,295 + ABZR87_RS03910 0.84 +1.6
810,296 - ABZR87_RS03910 0.84 -2.9
810,296 - ABZR87_RS03910 0.84 -2.8
810,296 - ABZR87_RS03910 0.84 +4.2
810,358 + ABZR87_RS03910 0.88 +2.6
810,410 + -2.9
810,410 + -2.8
810,411 - -0.8
810,411 - +0.9
810,411 - -0.8
810,411 - -1.2
810,411 - -3.4
810,411 - -0.7
810,411 - +2.7
810,412 + -0.5
810,412 + +0.2
810,429 - -0.7
810,429 - +0.5
810,541 + +0.9
810,541 + -3.4
810,542 - -0.9
810,542 - -0.4
810,553 + -2.3
810,554 - -0.1
810,554 - +0.9
810,554 - +0.3
810,563 + -1.6
810,563 + +0.0
810,954 + +0.8
810,954 + -1.4
810,954 + -2.3
811,417 + +0.5
811,417 + -1.5
811,418 - -0.3
811,418 - -1.3
811,418 - -1.9
811,418 - -1.3
811,419 + -2.4
811,419 + -3.1
811,420 - -0.6
811,420 - +1.2
811,420 - +1.4
811,480 + -2.0
811,480 + -2.7
811,481 - -2.0
811,481 - +0.4
811,515 + ABZR87_RS03915 0.11 -1.5
811,515 + ABZR87_RS03915 0.11 -0.6
811,515 + ABZR87_RS03915 0.11 -2.9
811,515 + ABZR87_RS03915 0.11 -1.1
811,515 + ABZR87_RS03915 0.11 +0.4
811,515 + ABZR87_RS03915 0.11 +0.9
811,515 + ABZR87_RS03915 0.11 +1.1
811,515 + ABZR87_RS03915 0.11 +0.9
811,515 + ABZR87_RS03915 0.11 -0.4
811,515 + ABZR87_RS03915 0.11 +1.5
811,515 + ABZR87_RS03915 0.11 -2.1
811,516 - ABZR87_RS03915 0.11 -2.5
811,516 - ABZR87_RS03915 0.11 -2.3
811,516 - ABZR87_RS03915 0.11 +0.0
811,516 - ABZR87_RS03915 0.11 -0.3
811,516 - ABZR87_RS03915 0.11 -0.9
811,516 - ABZR87_RS03915 0.11 -0.5
811,516 - ABZR87_RS03915 0.11 -0.3
811,516 - ABZR87_RS03915 0.11 -1.2
811,516 - ABZR87_RS03915 0.11 -1.7
811,516 - ABZR87_RS03915 0.11 -2.5
811,516 - ABZR87_RS03915 0.11 -4.1
811,516 - ABZR87_RS03915 0.11 -2.0
811,516 - ABZR87_RS03915 0.11 -2.4
811,516 - ABZR87_RS03915 0.11 -2.0

Or see this region's nucleotide sequence