Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02850 and ABZR87_RS02855 are separated by 83 nucleotides ABZR87_RS02855 and ABZR87_RS02860 are separated by 114 nucleotides ABZR87_RS02860 and ABZR87_RS02865 are separated by 186 nucleotides
ABZR87_RS02850: ABZR87_RS02850 - elongation factor Tu, at 590,138 to 591,346
_RS02850
ABZR87_RS02855: ABZR87_RS02855 - elongation factor G, at 591,430 to 593,556
_RS02855
ABZR87_RS02860: ABZR87_RS02860 - 30S ribosomal protein S7, at 593,671 to 594,141
_RS02860
ABZR87_RS02865: ABZR87_RS02865 - 30S ribosomal protein S12, at 594,328 to 594,705
_RS02865
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 590.495 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 591.373 kb on - strand at 591.380 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.439 kb on - strand at 591.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 590,495 - ABZR87_RS02850 0.30 -0.4 590,959 - ABZR87_RS02850 0.68 -0.5 590,959 - ABZR87_RS02850 0.68 -1.0 590,959 - ABZR87_RS02850 0.68 +2.2 590,959 - ABZR87_RS02850 0.68 +0.6 590,959 - ABZR87_RS02850 0.68 -0.5 591,373 - +0.6 591,380 - +1.4 591,432 - +1.0 591,432 - -2.4 591,432 - -1.5 591,439 - +1.1 591,439 - +2.7
Or see this region's nucleotide sequence