Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02435 and ABZR87_RS02440 are separated by 84 nucleotides ABZR87_RS02440 and ABZR87_RS02445 are separated by 61 nucleotides ABZR87_RS02445 and ABZR87_RS02450 are separated by 20 nucleotides ABZR87_RS02450 and ABZR87_RS02455 are separated by 62 nucleotides ABZR87_RS02455 and ABZR87_RS02460 are separated by 31 nucleotides
ABZR87_RS02435: ABZR87_RS02435 - ABC transporter ATP-binding protein, at 521,108 to 522,193
_RS02435
ABZR87_RS02440: ABZR87_RS02440 - twin-arginine translocase subunit TatC, at 522,278 to 523,081
_RS02440
ABZR87_RS02445: ABZR87_RS02445 - Sec-independent protein translocase protein TatB, at 523,143 to 523,655
_RS02445
ABZR87_RS02450: ABZR87_RS02450 - Sec-independent protein translocase subunit TatA, at 523,676 to 523,924
_RS02450
ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361
_RS02455
ABZR87_RS02460: ABZR87_RS02460 - phosphoribosyl-ATP diphosphatase, at 524,393 to 524,767
_RS02460
Position (kb) 523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 522.146 kb on + strand at 522.146 kb on + strand at 522.147 kb on - strand at 522.147 kb on - strand at 522.147 kb on - strand at 522.183 kb on - strand at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.369 kb on + strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.370 kb on - strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.462 kb on + strand, within ABZR87_RS02440 at 522.463 kb on - strand, within ABZR87_RS02440 at 522.463 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.528 kb on - strand, within ABZR87_RS02440 at 522.533 kb on + strand, within ABZR87_RS02440 at 522.534 kb on - strand, within ABZR87_RS02440 at 522.534 kb on - strand, within ABZR87_RS02440 at 522.585 kb on + strand, within ABZR87_RS02440 at 522.585 kb on + strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.586 kb on - strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.630 kb on + strand, within ABZR87_RS02440 at 522.631 kb on - strand, within ABZR87_RS02440 at 522.631 kb on - strand, within ABZR87_RS02440 at 522.672 kb on + strand, within ABZR87_RS02440 at 522.673 kb on - strand, within ABZR87_RS02440 at 522.673 kb on - strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.705 kb on + strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.706 kb on - strand, within ABZR87_RS02440 at 522.750 kb on + strand, within ABZR87_RS02440 at 522.750 kb on + strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.751 kb on - strand, within ABZR87_RS02440 at 522.783 kb on + strand, within ABZR87_RS02440 at 522.783 kb on + strand, within ABZR87_RS02440 at 522.784 kb on - strand, within ABZR87_RS02440 at 522.942 kb on + strand, within ABZR87_RS02440 at 522.942 kb on + strand, within ABZR87_RS02440 at 523.295 kb on + strand, within ABZR87_RS02445 at 523.296 kb on - strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.531 kb on + strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.532 kb on - strand, within ABZR87_RS02445 at 523.913 kb on - strand at 523.929 kb on + strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.939 kb on + strand at 523.939 kb on + strand at 523.940 kb on - strand at 523.940 kb on - strand at 523.943 kb on + strand at 523.943 kb on + strand at 523.944 kb on - strand at 524.000 kb on + strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.024 kb on + strand at 524.025 kb on - strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.049 kb on - strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.351 kb on + strand at 524.351 kb on + strand at 524.351 kb on + strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 522,146 + +1.2 522,146 + -1.0 522,147 - +0.6 522,147 - +1.6 522,147 - +0.6 522,183 - -0.5 522,369 + ABZR87_RS02440 0.11 -2.0 522,369 + ABZR87_RS02440 0.11 +0.8 522,369 + ABZR87_RS02440 0.11 -2.5 522,369 + ABZR87_RS02440 0.11 -1.9 522,370 - ABZR87_RS02440 0.11 -2.4 522,370 - ABZR87_RS02440 0.11 -1.8 522,370 - ABZR87_RS02440 0.11 +0.0 522,370 - ABZR87_RS02440 0.11 -2.9 522,462 + ABZR87_RS02440 0.23 -0.7 522,462 + ABZR87_RS02440 0.23 -0.7 522,462 + ABZR87_RS02440 0.23 -2.2 522,462 + ABZR87_RS02440 0.23 -0.4 522,462 + ABZR87_RS02440 0.23 -2.2 522,463 - ABZR87_RS02440 0.23 -1.8 522,463 - ABZR87_RS02440 0.23 -1.2 522,528 - ABZR87_RS02440 0.31 -3.3 522,528 - ABZR87_RS02440 0.31 -0.9 522,528 - ABZR87_RS02440 0.31 -0.6 522,528 - ABZR87_RS02440 0.31 -0.2 522,533 + ABZR87_RS02440 0.32 -1.9 522,534 - ABZR87_RS02440 0.32 +0.2 522,534 - ABZR87_RS02440 0.32 -1.6 522,585 + ABZR87_RS02440 0.38 +0.4 522,585 + ABZR87_RS02440 0.38 -0.3 522,586 - ABZR87_RS02440 0.38 -3.3 522,586 - ABZR87_RS02440 0.38 -1.3 522,586 - ABZR87_RS02440 0.38 -2.3 522,586 - ABZR87_RS02440 0.38 -1.7 522,586 - ABZR87_RS02440 0.38 -1.5 522,586 - ABZR87_RS02440 0.38 -1.1 522,630 + ABZR87_RS02440 0.44 -3.1 522,630 + ABZR87_RS02440 0.44 -1.9 522,630 + ABZR87_RS02440 0.44 -2.8 522,631 - ABZR87_RS02440 0.44 -2.0 522,631 - ABZR87_RS02440 0.44 -1.7 522,672 + ABZR87_RS02440 0.49 -2.1 522,673 - ABZR87_RS02440 0.49 -2.2 522,673 - ABZR87_RS02440 0.49 -1.6 522,705 + ABZR87_RS02440 0.53 -1.1 522,705 + ABZR87_RS02440 0.53 -2.6 522,705 + ABZR87_RS02440 0.53 -2.4 522,705 + ABZR87_RS02440 0.53 -1.3 522,705 + ABZR87_RS02440 0.53 -2.7 522,705 + ABZR87_RS02440 0.53 -1.7 522,705 + ABZR87_RS02440 0.53 -0.7 522,705 + ABZR87_RS02440 0.53 -1.5 522,705 + ABZR87_RS02440 0.53 -0.3 522,705 + ABZR87_RS02440 0.53 -0.9 522,706 - ABZR87_RS02440 0.53 -2.6 522,706 - ABZR87_RS02440 0.53 -0.3 522,706 - ABZR87_RS02440 0.53 -1.2 522,706 - ABZR87_RS02440 0.53 -2.4 522,750 + ABZR87_RS02440 0.59 -0.9 522,750 + ABZR87_RS02440 0.59 -1.0 522,751 - ABZR87_RS02440 0.59 -2.1 522,751 - ABZR87_RS02440 0.59 -1.8 522,751 - ABZR87_RS02440 0.59 -1.3 522,783 + ABZR87_RS02440 0.63 +0.2 522,783 + ABZR87_RS02440 0.63 -1.8 522,784 - ABZR87_RS02440 0.63 -1.3 522,942 + ABZR87_RS02440 0.83 -0.3 522,942 + ABZR87_RS02440 0.83 -1.3 523,295 + ABZR87_RS02445 0.30 -0.5 523,296 - ABZR87_RS02445 0.30 -2.6 523,531 + ABZR87_RS02445 0.76 -2.5 523,531 + ABZR87_RS02445 0.76 -0.1 523,531 + ABZR87_RS02445 0.76 -1.2 523,531 + ABZR87_RS02445 0.76 +0.6 523,532 - ABZR87_RS02445 0.76 -2.2 523,532 - ABZR87_RS02445 0.76 -2.7 523,532 - ABZR87_RS02445 0.76 -1.5 523,532 - ABZR87_RS02445 0.76 -0.7 523,532 - ABZR87_RS02445 0.76 +1.9 523,532 - ABZR87_RS02445 0.76 -2.1 523,913 - -1.1 523,929 + -2.6 523,930 - -2.3 523,930 - -1.8 523,930 - -0.5 523,930 - -0.7 523,930 - -2.0 523,930 - -1.2 523,939 + -0.7 523,939 + -2.9 523,940 - -3.6 523,940 - +1.7 523,943 + -1.6 523,943 + +2.2 523,944 - +1.8 524,000 + -1.4 524,001 - -2.9 524,001 - -0.5 524,001 - -3.6 524,001 - +0.4 524,001 - +0.7 524,024 + -1.8 524,025 - ABZR87_RS02455 0.10 -0.3 524,043 + ABZR87_RS02455 0.15 -0.3 524,043 + ABZR87_RS02455 0.15 -2.0 524,044 - ABZR87_RS02455 0.15 -2.9 524,044 - ABZR87_RS02455 0.15 -1.5 524,044 - ABZR87_RS02455 0.15 +0.1 524,044 - ABZR87_RS02455 0.15 +0.0 524,048 + ABZR87_RS02455 0.16 +0.2 524,048 + ABZR87_RS02455 0.16 -3.3 524,048 + ABZR87_RS02455 0.16 -3.6 524,048 + ABZR87_RS02455 0.16 -1.5 524,049 - ABZR87_RS02455 0.17 +1.3 524,134 + ABZR87_RS02455 0.39 -1.7 524,134 + ABZR87_RS02455 0.39 -2.7 524,134 + ABZR87_RS02455 0.39 +1.0 524,134 + ABZR87_RS02455 0.39 -1.2 524,134 + ABZR87_RS02455 0.39 -3.0 524,134 + ABZR87_RS02455 0.39 -3.0 524,134 + ABZR87_RS02455 0.39 +1.2 524,134 + ABZR87_RS02455 0.39 +0.9 524,134 + ABZR87_RS02455 0.39 +0.6 524,135 - ABZR87_RS02455 0.39 -3.4 524,135 - ABZR87_RS02455 0.39 -2.9 524,135 - ABZR87_RS02455 0.39 +1.0 524,135 - ABZR87_RS02455 0.39 +2.3 524,135 - ABZR87_RS02455 0.39 -2.9 524,135 - ABZR87_RS02455 0.39 +1.3 524,135 - ABZR87_RS02455 0.39 -2.6 524,135 - ABZR87_RS02455 0.39 -1.9 524,135 - ABZR87_RS02455 0.39 +0.1 524,180 + ABZR87_RS02455 0.51 -1.2 524,180 + ABZR87_RS02455 0.51 -2.1 524,180 + ABZR87_RS02455 0.51 -0.4 524,180 + ABZR87_RS02455 0.51 -0.7 524,181 - ABZR87_RS02455 0.52 +0.8 524,181 - ABZR87_RS02455 0.52 +0.1 524,181 - ABZR87_RS02455 0.52 -0.6 524,208 + ABZR87_RS02455 0.59 -2.5 524,208 + ABZR87_RS02455 0.59 +1.8 524,208 + ABZR87_RS02455 0.59 +1.7 524,208 + ABZR87_RS02455 0.59 -1.3 524,208 + ABZR87_RS02455 0.59 +0.6 524,208 + ABZR87_RS02455 0.59 -2.3 524,208 + ABZR87_RS02455 0.59 -2.0 524,208 + ABZR87_RS02455 0.59 -2.2 524,208 + ABZR87_RS02455 0.59 -0.0 524,209 - ABZR87_RS02455 0.59 -1.3 524,209 - ABZR87_RS02455 0.59 -0.2 524,209 - ABZR87_RS02455 0.59 -2.2 524,209 - ABZR87_RS02455 0.59 -0.3 524,214 - ABZR87_RS02455 0.61 +0.8 524,214 - ABZR87_RS02455 0.61 -2.1 524,214 - ABZR87_RS02455 0.61 +1.9 524,244 + ABZR87_RS02455 0.69 -2.4 524,244 + ABZR87_RS02455 0.69 +1.3 524,279 + ABZR87_RS02455 0.78 +1.4 524,279 + ABZR87_RS02455 0.78 -0.9 524,280 - ABZR87_RS02455 0.78 +0.1 524,280 - ABZR87_RS02455 0.78 +0.3 524,286 + ABZR87_RS02455 0.80 -2.1 524,286 + ABZR87_RS02455 0.80 +1.1 524,287 - ABZR87_RS02455 0.80 +0.6 524,287 - ABZR87_RS02455 0.80 -2.9 524,351 + -1.2 524,351 + -3.4 524,351 + +2.9 524,352 - -3.5 524,352 - -1.1 524,352 - +1.2 524,352 - -0.1 524,352 - +1.9 524,352 - +0.2 524,352 - +0.9 524,352 - +1.3
Or see this region's nucleotide sequence