Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02410

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02405 and ABZR87_RS02410 are separated by 332 nucleotidesABZR87_RS02410 and ABZR87_RS02415 are separated by 107 nucleotidesABZR87_RS02415 and ABZR87_RS02420 overlap by 4 nucleotides ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177 _RS02405 ABZR87_RS02410: ABZR87_RS02410 - extracellular solute-binding protein, at 514,510 to 515,652 _RS02410 ABZR87_RS02415: ABZR87_RS02415 - response regulator, at 515,760 to 516,461 _RS02415 ABZR87_RS02420: ABZR87_RS02420 - sensor histidine kinase, at 516,458 to 517,987 _RS02420 Position (kb) 514 515 516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 514.481 kb on + strandat 514.481 kb on + strandat 514.481 kb on + strandat 514.580 kb on - strandat 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.777 kb on - strand, within ABZR87_RS02410at 514.805 kb on + strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.821 kb on - strand, within ABZR87_RS02410at 514.850 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.881 kb on - strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.153 kb on + strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.244 kb on - strand, within ABZR87_RS02410at 515.244 kb on - strand, within ABZR87_RS02410at 515.433 kb on - strand, within ABZR87_RS02410at 515.459 kb on + strand, within ABZR87_RS02410at 515.459 kb on + strand, within ABZR87_RS02410at 515.460 kb on - strand, within ABZR87_RS02410at 515.460 kb on - strand, within ABZR87_RS02410at 515.507 kb on + strand, within ABZR87_RS02410at 515.519 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.639 kb on - strandat 515.639 kb on - strandat 515.639 kb on - strandat 515.667 kb on + strandat 515.686 kb on - strandat 515.719 kb on + strandat 515.720 kb on - strandat 515.720 kb on - strandat 515.720 kb on - strandat 515.732 kb on + strandat 515.733 kb on - strandat 515.745 kb on - strandat 515.992 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.570 kb on - strandat 516.602 kb on + strandat 516.603 kb on - strandat 516.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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514,481 + -1.8
514,481 + +1.5
514,481 + -3.2
514,580 - -1.5
514,776 + ABZR87_RS02410 0.23 -1.1
514,776 + ABZR87_RS02410 0.23 -1.2
514,776 + ABZR87_RS02410 0.23 -1.7
514,776 + ABZR87_RS02410 0.23 +0.1
514,776 + ABZR87_RS02410 0.23 -3.6
514,776 + ABZR87_RS02410 0.23 +0.3
514,777 - ABZR87_RS02410 0.23 +1.2
514,805 + ABZR87_RS02410 0.26 +1.2
514,806 - ABZR87_RS02410 0.26 +1.8
514,806 - ABZR87_RS02410 0.26 -3.4
514,821 - ABZR87_RS02410 0.27 -3.7
514,850 + ABZR87_RS02410 0.30 -2.6
514,862 + ABZR87_RS02410 0.31 +3.8
514,862 + ABZR87_RS02410 0.31 +1.2
514,863 - ABZR87_RS02410 0.31 -0.8
514,863 - ABZR87_RS02410 0.31 +0.4
514,863 - ABZR87_RS02410 0.31 +1.6
514,863 - ABZR87_RS02410 0.31 -3.5
514,880 + ABZR87_RS02410 0.32 -3.0
514,880 + ABZR87_RS02410 0.32 -1.9
514,881 - ABZR87_RS02410 0.32 +0.4
514,937 + ABZR87_RS02410 0.37 -1.0
514,937 + ABZR87_RS02410 0.37 -2.3
514,937 + ABZR87_RS02410 0.37 -1.5
514,937 + ABZR87_RS02410 0.37 +2.0
514,937 + ABZR87_RS02410 0.37 +2.7
514,937 + ABZR87_RS02410 0.37 -2.5
514,937 + ABZR87_RS02410 0.37 +2.5
514,937 + ABZR87_RS02410 0.37 +1.6
514,937 + ABZR87_RS02410 0.37 -1.2
514,938 - ABZR87_RS02410 0.37 +1.0
514,938 - ABZR87_RS02410 0.37 -1.2
514,938 - ABZR87_RS02410 0.37 -0.4
514,938 - ABZR87_RS02410 0.37 -1.3
514,938 - ABZR87_RS02410 0.37 +1.8
514,938 - ABZR87_RS02410 0.37 +1.2
514,938 - ABZR87_RS02410 0.37 -3.2
515,048 + ABZR87_RS02410 0.47 -3.4
515,048 + ABZR87_RS02410 0.47 +1.2
515,048 + ABZR87_RS02410 0.47 -0.3
515,048 + ABZR87_RS02410 0.47 +0.5
515,049 - ABZR87_RS02410 0.47 +0.6
515,049 - ABZR87_RS02410 0.47 -1.2
515,049 - ABZR87_RS02410 0.47 -2.1
515,049 - ABZR87_RS02410 0.47 +0.4
515,049 - ABZR87_RS02410 0.47 -0.0
515,153 + ABZR87_RS02410 0.56 -0.1
515,154 - ABZR87_RS02410 0.56 -0.4
515,154 - ABZR87_RS02410 0.56 +2.0
515,174 + ABZR87_RS02410 0.58 -0.5
515,174 + ABZR87_RS02410 0.58 -1.4
515,174 + ABZR87_RS02410 0.58 +0.6
515,174 + ABZR87_RS02410 0.58 -1.4
515,174 + ABZR87_RS02410 0.58 +1.9
515,174 + ABZR87_RS02410 0.58 +1.3
515,175 - ABZR87_RS02410 0.58 +3.7
515,175 - ABZR87_RS02410 0.58 -2.4
515,175 - ABZR87_RS02410 0.58 +0.8
515,175 - ABZR87_RS02410 0.58 +1.5
515,223 - ABZR87_RS02410 0.62 -1.4
515,223 - ABZR87_RS02410 0.62 -1.0
515,223 - ABZR87_RS02410 0.62 -3.1
515,223 - ABZR87_RS02410 0.62 -1.9
515,243 + ABZR87_RS02410 0.64 +2.5
515,243 + ABZR87_RS02410 0.64 +2.6
515,243 + ABZR87_RS02410 0.64 -1.3
515,244 - ABZR87_RS02410 0.64 -1.4
515,244 - ABZR87_RS02410 0.64 -0.4
515,433 - ABZR87_RS02410 0.81 -0.7
515,459 + ABZR87_RS02410 0.83 -0.9
515,459 + ABZR87_RS02410 0.83 +0.6
515,460 - ABZR87_RS02410 0.83 -0.4
515,460 - ABZR87_RS02410 0.83 +0.6
515,507 + ABZR87_RS02410 0.87 -3.4
515,519 + ABZR87_RS02410 0.88 -0.2
515,522 + ABZR87_RS02410 0.89 +1.0
515,522 + ABZR87_RS02410 0.89 -0.3
515,522 + ABZR87_RS02410 0.89 +0.6
515,522 + ABZR87_RS02410 0.89 +2.0
515,522 + ABZR87_RS02410 0.89 -4.1
515,523 - ABZR87_RS02410 0.89 -1.5
515,523 - ABZR87_RS02410 0.89 -2.8
515,523 - ABZR87_RS02410 0.89 +1.8
515,523 - ABZR87_RS02410 0.89 +2.9
515,523 - ABZR87_RS02410 0.89 -2.6
515,523 - ABZR87_RS02410 0.89 -1.4
515,523 - ABZR87_RS02410 0.89 -0.1
515,523 - ABZR87_RS02410 0.89 +1.0
515,638 + +1.2
515,638 + +0.3
515,638 + -3.5
515,638 + -0.7
515,638 + -2.8
515,639 - -2.9
515,639 - +1.8
515,639 - +0.4
515,667 + +0.5
515,686 - +0.7
515,719 + +2.0
515,720 - -0.7
515,720 - +1.1
515,720 - +0.7
515,732 + -0.4
515,733 - +3.1
515,745 - -0.3
515,992 + ABZR87_RS02415 0.33 -0.8
516,376 + ABZR87_RS02415 0.88 -2.8
516,376 + ABZR87_RS02415 0.88 +0.6
516,376 + ABZR87_RS02415 0.88 -1.2
516,376 + ABZR87_RS02415 0.88 -2.3
516,377 - ABZR87_RS02415 0.88 +1.9
516,377 - ABZR87_RS02415 0.88 -3.6
516,377 - ABZR87_RS02415 0.88 +1.5
516,405 + -4.3
516,405 + -0.7
516,405 + -0.9
516,405 + -2.7
516,406 - +0.0
516,406 - -1.2
516,406 - +0.9
516,406 - -1.2
516,406 - +1.5
516,570 - +0.2
516,602 + +0.2
516,603 - -0.4
516,603 - +2.1

Or see this region's nucleotide sequence