Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02380 and ABZR87_RS02385 overlap by 1 nucleotides ABZR87_RS02385 and ABZR87_RS02390 are separated by 245 nucleotides ABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotides ABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotides
ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375
_RS02380
ABZR87_RS02385: ABZR87_RS02385 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 509,375 to 509,983
_RS02385
ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657
_RS02390
ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416
_RS02395
ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650
_RS02400
Position (kb) 510
511 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 509.248 kb on + strand at 509.273 kb on + strand at 509.275 kb on + strand at 509.275 kb on + strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.278 kb on + strand at 509.279 kb on - strand at 509.279 kb on - strand at 509.398 kb on + strand at 509.433 kb on + strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.662 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.942 kb on + strand at 509.942 kb on + strand at 509.942 kb on + strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 510.011 kb on + strand at 510.011 kb on + strand at 510.012 kb on - strand at 510.046 kb on - strand at 510.046 kb on - strand at 510.088 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.185 kb on + strand at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.528 kb on + strand, within ABZR87_RS02390 at 510.529 kb on - strand, within ABZR87_RS02390 at 510.655 kb on + strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 511.131 kb on - strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.311 kb on + strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.391 kb on + strand at 511.391 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.622 kb on + strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 509,248 + -2.2 509,273 + -3.3 509,275 + -2.6 509,275 + +0.5 509,276 - -1.1 509,276 - -2.5 509,276 - +0.3 509,276 - -1.8 509,276 - +2.9 509,278 + -2.5 509,279 - -0.4 509,279 - -2.6 509,398 + -2.7 509,433 + -0.0 509,434 - -2.3 509,434 - -2.0 509,434 - -2.9 509,434 - -2.0 509,434 - -0.2 509,434 - -2.4 509,626 + ABZR87_RS02385 0.41 -1.8 509,626 + ABZR87_RS02385 0.41 -4.3 509,626 + ABZR87_RS02385 0.41 -1.9 509,627 - ABZR87_RS02385 0.41 -2.0 509,627 - ABZR87_RS02385 0.41 -0.8 509,661 + ABZR87_RS02385 0.47 -2.0 509,661 + ABZR87_RS02385 0.47 -3.7 509,661 + ABZR87_RS02385 0.47 -2.9 509,661 + ABZR87_RS02385 0.47 -2.6 509,662 - ABZR87_RS02385 0.47 -0.3 509,835 - ABZR87_RS02385 0.76 +0.8 509,835 - ABZR87_RS02385 0.76 +0.6 509,942 + -2.2 509,942 + -0.5 509,942 + -4.5 509,943 - -1.6 509,943 - -1.0 509,943 - -2.4 509,943 - -2.8 509,943 - -1.7 510,011 + -3.1 510,011 + -1.8 510,012 - +1.6 510,046 - -0.3 510,046 - -2.8 510,088 + -2.4 510,090 + +1.5 510,090 + -3.0 510,090 + +2.0 510,091 - +1.0 510,091 - -2.3 510,091 - -2.3 510,091 - -2.1 510,185 + +1.3 510,369 + ABZR87_RS02390 0.33 -0.0 510,369 + ABZR87_RS02390 0.33 -2.3 510,369 + ABZR87_RS02390 0.33 -0.4 510,369 + ABZR87_RS02390 0.33 -0.3 510,369 + ABZR87_RS02390 0.33 +0.2 510,370 - ABZR87_RS02390 0.33 +0.6 510,370 - ABZR87_RS02390 0.33 -0.9 510,370 - ABZR87_RS02390 0.33 +0.6 510,370 - ABZR87_RS02390 0.33 -0.4 510,370 - ABZR87_RS02390 0.33 +1.2 510,370 - ABZR87_RS02390 0.33 -1.6 510,370 - ABZR87_RS02390 0.33 -0.9 510,370 - ABZR87_RS02390 0.33 -1.7 510,438 + ABZR87_RS02390 0.49 -2.2 510,438 + ABZR87_RS02390 0.49 +0.2 510,438 + ABZR87_RS02390 0.49 -3.1 510,438 + ABZR87_RS02390 0.49 -1.8 510,438 + ABZR87_RS02390 0.49 -0.2 510,438 + ABZR87_RS02390 0.49 -0.5 510,438 + ABZR87_RS02390 0.49 -0.3 510,438 + ABZR87_RS02390 0.49 -0.9 510,439 - ABZR87_RS02390 0.49 -2.1 510,439 - ABZR87_RS02390 0.49 -2.7 510,439 - ABZR87_RS02390 0.49 -0.8 510,439 - ABZR87_RS02390 0.49 -0.1 510,439 - ABZR87_RS02390 0.49 -1.6 510,439 - ABZR87_RS02390 0.49 -0.6 510,439 - ABZR87_RS02390 0.49 -2.6 510,439 - ABZR87_RS02390 0.49 -0.6 510,528 + ABZR87_RS02390 0.70 -0.7 510,529 - ABZR87_RS02390 0.70 -0.3 510,655 + -2.9 510,656 - -2.4 510,656 - +0.4 510,656 - +1.6 510,706 + +2.1 510,706 + +0.5 510,706 + -1.0 510,706 + -0.8 510,706 + -2.9 510,707 - +0.8 510,707 - +1.0 510,707 - -2.1 510,707 - +2.1 510,785 + ABZR87_RS02395 0.15 +2.4 510,785 + ABZR87_RS02395 0.15 +0.5 510,785 + ABZR87_RS02395 0.15 -1.5 510,785 + ABZR87_RS02395 0.15 -1.5 510,785 + ABZR87_RS02395 0.15 +0.9 510,785 + ABZR87_RS02395 0.15 -0.1 510,786 - ABZR87_RS02395 0.16 +0.9 510,786 - ABZR87_RS02395 0.16 -2.9 510,786 - ABZR87_RS02395 0.16 -1.1 510,786 - ABZR87_RS02395 0.16 -0.8 510,786 - ABZR87_RS02395 0.16 -1.6 510,786 - ABZR87_RS02395 0.16 +0.4 510,786 - ABZR87_RS02395 0.16 +0.2 510,845 + ABZR87_RS02395 0.23 +0.5 510,845 + ABZR87_RS02395 0.23 +1.5 510,845 + ABZR87_RS02395 0.23 +0.8 510,846 - ABZR87_RS02395 0.24 -2.9 510,846 - ABZR87_RS02395 0.24 +1.2 510,846 - ABZR87_RS02395 0.24 +1.5 510,846 - ABZR87_RS02395 0.24 +0.2 510,846 - ABZR87_RS02395 0.24 -3.4 510,846 - ABZR87_RS02395 0.24 +0.3 510,846 - ABZR87_RS02395 0.24 -0.6 510,846 - ABZR87_RS02395 0.24 -3.1 510,846 - ABZR87_RS02395 0.24 -0.7 510,846 - ABZR87_RS02395 0.24 -0.8 510,995 - ABZR87_RS02395 0.44 +1.8 510,995 - ABZR87_RS02395 0.44 +2.3 510,995 - ABZR87_RS02395 0.44 +0.8 511,131 - ABZR87_RS02395 0.62 +2.3 511,220 + ABZR87_RS02395 0.74 -0.3 511,220 + ABZR87_RS02395 0.74 -0.8 511,220 + ABZR87_RS02395 0.74 -0.2 511,220 + ABZR87_RS02395 0.74 +1.6 511,221 - ABZR87_RS02395 0.74 -1.1 511,221 - ABZR87_RS02395 0.74 +2.0 511,221 - ABZR87_RS02395 0.74 -0.9 511,221 - ABZR87_RS02395 0.74 +1.6 511,311 + ABZR87_RS02395 0.86 -1.5 511,312 - ABZR87_RS02395 0.86 +1.4 511,312 - ABZR87_RS02395 0.86 -3.6 511,336 + ABZR87_RS02395 0.89 -0.4 511,336 + ABZR87_RS02395 0.89 -1.4 511,337 - ABZR87_RS02395 0.89 +1.9 511,337 - ABZR87_RS02395 0.89 -0.8 511,337 - ABZR87_RS02395 0.89 -1.9 511,352 + -3.7 511,352 + -3.2 511,352 + +0.4 511,352 + -0.1 511,353 - -3.9 511,353 - +1.4 511,353 - +1.2 511,353 - +0.7 511,391 + +2.6 511,391 + +1.7 511,435 + +0.4 511,435 + +1.8 511,435 + -2.3 511,436 - -3.8 511,436 - +0.6 511,436 - +0.6 511,436 - -0.4 511,436 - -1.6 511,622 + ABZR87_RS02400 0.15 +1.2 511,623 - ABZR87_RS02400 0.15 -3.4 511,623 - ABZR87_RS02400 0.15 -3.8
Or see this region's nucleotide sequence