Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02335 and ABZR87_RS02340 are separated by 635 nucleotides ABZR87_RS02340 and ABZR87_RS02345 are separated by 31 nucleotides ABZR87_RS02345 and ABZR87_RS02350 are separated by 224 nucleotides
ABZR87_RS02335: ABZR87_RS02335 - ubiquinol oxidase subunit II, at 499,794 to 500,747
_RS02335
ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026
_RS02340
ABZR87_RS02345: ABZR87_RS02345 - hypothetical protein, at 503,058 to 503,264
_RS02345
ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883
_RS02350
Position (kb) 501
502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 500.425 kb on + strand, within ABZR87_RS02335 at 500.426 kb on - strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.451 kb on - strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.543 kb on - strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.877 kb on - strand at 500.877 kb on - strand at 500.892 kb on + strand at 500.892 kb on + strand at 501.076 kb on + strand at 501.077 kb on - strand at 501.077 kb on - strand at 501.077 kb on - strand at 501.131 kb on - strand at 501.158 kb on + strand at 501.174 kb on + strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.212 kb on + strand at 501.219 kb on - strand at 501.225 kb on + strand at 501.225 kb on + strand at 501.225 kb on + strand at 501.226 kb on - strand at 501.385 kb on - strand at 501.441 kb on + strand at 501.722 kb on + strand, within ABZR87_RS02340 at 501.722 kb on + strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.921 kb on + strand, within ABZR87_RS02340 at 501.922 kb on - strand, within ABZR87_RS02340 at 501.922 kb on - strand, within ABZR87_RS02340 at 501.922 kb on - strand, within ABZR87_RS02340 at 501.922 kb on - strand, within ABZR87_RS02340 at 501.930 kb on + strand, within ABZR87_RS02340 at 501.930 kb on + strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.931 kb on - strand, within ABZR87_RS02340 at 501.999 kb on + strand, within ABZR87_RS02340 at 502.000 kb on - strand, within ABZR87_RS02340 at 502.000 kb on - strand, within ABZR87_RS02340 at 502.000 kb on - strand, within ABZR87_RS02340 at 502.128 kb on + strand, within ABZR87_RS02340 at 502.128 kb on + strand, within ABZR87_RS02340 at 502.128 kb on + strand, within ABZR87_RS02340 at 502.128 kb on + strand, within ABZR87_RS02340 at 502.128 kb on + strand, within ABZR87_RS02340 at 502.129 kb on - strand, within ABZR87_RS02340 at 502.129 kb on - strand, within ABZR87_RS02340 at 502.129 kb on - strand, within ABZR87_RS02340 at 502.129 kb on - strand, within ABZR87_RS02340 at 502.275 kb on + strand, within ABZR87_RS02340 at 502.275 kb on + strand, within ABZR87_RS02340 at 502.275 kb on + strand, within ABZR87_RS02340 at 502.276 kb on - strand, within ABZR87_RS02340 at 502.276 kb on - strand, within ABZR87_RS02340 at 502.276 kb on - strand, within ABZR87_RS02340 at 502.566 kb on + strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.567 kb on - strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.660 kb on + strand, within ABZR87_RS02340 at 502.661 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.741 kb on - strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.775 kb on + strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.776 kb on - strand, within ABZR87_RS02340 at 502.788 kb on + strand, within ABZR87_RS02340 at 502.789 kb on - strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.809 kb on + strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.810 kb on - strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.813 kb on + strand, within ABZR87_RS02340 at 502.814 kb on - strand, within ABZR87_RS02340 at 503.016 kb on - strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.059 kb on + strand at 503.060 kb on - strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.065 kb on + strand at 503.066 kb on - strand at 503.066 kb on - strand at 503.098 kb on + strand, within ABZR87_RS02345 at 503.099 kb on - strand, within ABZR87_RS02345 at 503.429 kb on + strand at 503.451 kb on - strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.484 kb on + strand at 503.484 kb on + strand at 503.485 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.491 kb on - strand at 503.511 kb on - strand at 503.547 kb on + strand at 503.547 kb on + strand at 503.563 kb on + strand at 503.564 kb on - strand at 503.613 kb on + strand at 503.613 kb on + strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.614 kb on - strand at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.643 kb on + strand, within ABZR87_RS02350 at 503.694 kb on + strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.695 kb on - strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.823 kb on + strand, within ABZR87_RS02350 at 503.824 kb on - strand, within ABZR87_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 500,425 + ABZR87_RS02335 0.66 -2.0 500,426 - ABZR87_RS02335 0.66 -3.1 500,450 + ABZR87_RS02335 0.69 -0.1 500,450 + ABZR87_RS02335 0.69 -0.8 500,450 + ABZR87_RS02335 0.69 -1.4 500,451 - ABZR87_RS02335 0.69 +0.8 500,452 + ABZR87_RS02335 0.69 +1.3 500,452 + ABZR87_RS02335 0.69 -1.5 500,452 + ABZR87_RS02335 0.69 -1.9 500,452 + ABZR87_RS02335 0.69 -3.1 500,452 + ABZR87_RS02335 0.69 -1.6 500,452 + ABZR87_RS02335 0.69 -1.9 500,453 - ABZR87_RS02335 0.69 +1.2 500,453 - ABZR87_RS02335 0.69 -2.4 500,453 - ABZR87_RS02335 0.69 +2.3 500,453 - ABZR87_RS02335 0.69 -1.5 500,453 - ABZR87_RS02335 0.69 -1.8 500,453 - ABZR87_RS02335 0.69 -3.2 500,543 - ABZR87_RS02335 0.79 -0.0 500,569 + ABZR87_RS02335 0.81 -1.2 500,569 + ABZR87_RS02335 0.81 +1.2 500,747 + +0.2 500,747 + -1.6 500,747 + +0.8 500,747 + -2.9 500,747 + +1.1 500,747 + +1.0 500,747 + -2.3 500,747 + -1.5 500,747 + -1.6 500,747 + -2.0 500,748 - +2.2 500,748 - -2.5 500,748 - +1.6 500,748 - -2.9 500,748 - -2.2 500,748 - -2.6 500,748 - -2.4 500,877 - -0.3 500,877 - +0.4 500,892 + -1.6 500,892 + -1.2 501,076 + +0.4 501,077 - -2.9 501,077 - -3.5 501,077 - +1.2 501,131 - -0.4 501,158 + +0.5 501,174 + -0.0 501,175 - -3.0 501,175 - -2.5 501,175 - +1.1 501,175 - +0.3 501,212 + +0.6 501,219 - +1.3 501,225 + -1.2 501,225 + -2.6 501,225 + -3.3 501,226 - -2.4 501,385 - -3.1 501,441 + -1.7 501,722 + ABZR87_RS02340 0.21 -1.2 501,722 + ABZR87_RS02340 0.21 -3.0 501,723 - ABZR87_RS02340 0.21 -0.6 501,723 - ABZR87_RS02340 0.21 +1.3 501,723 - ABZR87_RS02340 0.21 -1.4 501,723 - ABZR87_RS02340 0.21 +0.3 501,723 - ABZR87_RS02340 0.21 -2.5 501,921 + ABZR87_RS02340 0.33 -0.5 501,922 - ABZR87_RS02340 0.33 +0.7 501,922 - ABZR87_RS02340 0.33 +0.4 501,922 - ABZR87_RS02340 0.33 -3.4 501,922 - ABZR87_RS02340 0.33 +1.2 501,930 + ABZR87_RS02340 0.33 -0.2 501,930 + ABZR87_RS02340 0.33 -1.1 501,931 - ABZR87_RS02340 0.33 +2.7 501,931 - ABZR87_RS02340 0.33 -1.1 501,931 - ABZR87_RS02340 0.33 -1.4 501,931 - ABZR87_RS02340 0.33 +2.1 501,931 - ABZR87_RS02340 0.33 -2.8 501,931 - ABZR87_RS02340 0.33 +0.8 501,999 + ABZR87_RS02340 0.37 -0.6 502,000 - ABZR87_RS02340 0.38 -0.2 502,000 - ABZR87_RS02340 0.38 -0.4 502,000 - ABZR87_RS02340 0.38 +1.8 502,128 + ABZR87_RS02340 0.45 -2.6 502,128 + ABZR87_RS02340 0.45 -3.2 502,128 + ABZR87_RS02340 0.45 +1.7 502,128 + ABZR87_RS02340 0.45 -2.1 502,128 + ABZR87_RS02340 0.45 -3.5 502,129 - ABZR87_RS02340 0.45 +1.4 502,129 - ABZR87_RS02340 0.45 -2.5 502,129 - ABZR87_RS02340 0.45 -3.3 502,129 - ABZR87_RS02340 0.45 -3.9 502,275 + ABZR87_RS02340 0.54 +0.2 502,275 + ABZR87_RS02340 0.54 +1.4 502,275 + ABZR87_RS02340 0.54 -4.0 502,276 - ABZR87_RS02340 0.54 -1.1 502,276 - ABZR87_RS02340 0.54 -1.2 502,276 - ABZR87_RS02340 0.54 +0.1 502,566 + ABZR87_RS02340 0.72 +1.7 502,567 - ABZR87_RS02340 0.72 +1.0 502,567 - ABZR87_RS02340 0.72 +0.2 502,660 + ABZR87_RS02340 0.78 -0.4 502,660 + ABZR87_RS02340 0.78 -1.7 502,661 - ABZR87_RS02340 0.78 +3.5 502,741 - ABZR87_RS02340 0.83 +1.7 502,741 - ABZR87_RS02340 0.83 +0.8 502,741 - ABZR87_RS02340 0.83 +0.8 502,741 - ABZR87_RS02340 0.83 -0.6 502,741 - ABZR87_RS02340 0.83 +0.8 502,775 + ABZR87_RS02340 0.85 +0.8 502,775 + ABZR87_RS02340 0.85 +1.1 502,775 + ABZR87_RS02340 0.85 -1.8 502,775 + ABZR87_RS02340 0.85 +1.2 502,776 - ABZR87_RS02340 0.85 -1.2 502,776 - ABZR87_RS02340 0.85 -3.2 502,776 - ABZR87_RS02340 0.85 +0.5 502,776 - ABZR87_RS02340 0.85 +1.2 502,788 + ABZR87_RS02340 0.85 +0.4 502,789 - ABZR87_RS02340 0.86 +0.8 502,809 + ABZR87_RS02340 0.87 +1.1 502,809 + ABZR87_RS02340 0.87 -0.0 502,809 + ABZR87_RS02340 0.87 +2.4 502,810 - ABZR87_RS02340 0.87 -2.4 502,810 - ABZR87_RS02340 0.87 -1.1 502,810 - ABZR87_RS02340 0.87 -0.1 502,810 - ABZR87_RS02340 0.87 -3.1 502,810 - ABZR87_RS02340 0.87 +0.2 502,813 + ABZR87_RS02340 0.87 -3.7 502,813 + ABZR87_RS02340 0.87 +1.8 502,814 - ABZR87_RS02340 0.87 +0.8 503,016 - -3.6 503,059 + -2.8 503,059 + -1.2 503,059 + -2.2 503,059 + +1.6 503,060 - +0.6 503,065 + -2.8 503,065 + +0.2 503,065 + -1.5 503,065 + +0.6 503,065 + +1.1 503,066 - +0.3 503,066 - -0.5 503,098 + ABZR87_RS02345 0.19 +0.9 503,099 - ABZR87_RS02345 0.20 +1.0 503,429 + +1.5 503,451 - -2.8 503,472 + -2.2 503,472 + -3.0 503,472 + -4.0 503,473 - -3.0 503,473 - +0.4 503,473 - -3.0 503,473 - -2.2 503,484 + +1.4 503,484 + +1.9 503,485 - -0.1 503,491 - +1.0 503,491 - -3.6 503,491 - +0.1 503,511 - -1.5 503,547 + +1.2 503,547 + +1.6 503,563 + -1.9 503,564 - +0.9 503,613 + -2.0 503,613 + -1.4 503,614 - -0.3 503,614 - -1.3 503,614 - +0.3 503,614 - -2.4 503,643 + ABZR87_RS02350 0.11 -0.2 503,643 + ABZR87_RS02350 0.11 +1.8 503,643 + ABZR87_RS02350 0.11 -2.6 503,643 + ABZR87_RS02350 0.11 -3.7 503,643 + ABZR87_RS02350 0.11 -0.3 503,694 + ABZR87_RS02350 0.15 -3.3 503,695 - ABZR87_RS02350 0.15 -1.0 503,695 - ABZR87_RS02350 0.15 -0.6 503,823 + ABZR87_RS02350 0.24 -0.1 503,823 + ABZR87_RS02350 0.24 -1.1 503,823 + ABZR87_RS02350 0.24 -1.1 503,823 + ABZR87_RS02350 0.24 -2.6 503,824 - ABZR87_RS02350 0.24 +0.5
Or see this region's nucleotide sequence