Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02315 and ABZR87_RS02320 are separated by 51 nucleotides ABZR87_RS02320 and ABZR87_RS02325 are separated by 0 nucleotides ABZR87_RS02325 and ABZR87_RS02330 are separated by 3 nucleotides
ABZR87_RS02315: ABZR87_RS02315 - winged helix DNA-binding domain-containing protein, at 495,609 to 496,739
_RS02315
ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159
_RS02320
ABZR87_RS02325: ABZR87_RS02325 - cytochrome o ubiquinol oxidase subunit III, at 497,160 to 497,801
_RS02325
ABZR87_RS02330: ABZR87_RS02330 - cytochrome o ubiquinol oxidase subunit I, at 497,805 to 499,784
_RS02330
Position (kb) 496
497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 496.054 kb on + strand, within ABZR87_RS02315 at 496.054 kb on + strand, within ABZR87_RS02315 at 496.055 kb on - strand, within ABZR87_RS02315 at 496.254 kb on + strand, within ABZR87_RS02315 at 496.255 kb on - strand, within ABZR87_RS02315 at 496.290 kb on - strand, within ABZR87_RS02315 at 496.339 kb on + strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.521 kb on + strand, within ABZR87_RS02315 at 496.521 kb on + strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.792 kb on + strand at 496.792 kb on + strand at 496.792 kb on + strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.820 kb on + strand at 496.821 kb on - strand at 496.821 kb on - strand at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 497.161 kb on + strand at 497.162 kb on - strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.367 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.573 kb on - strand, within ABZR87_RS02325 at 497.660 kb on + strand, within ABZR87_RS02325 at 497.661 kb on - strand, within ABZR87_RS02325 at 497.680 kb on + strand, within ABZR87_RS02325 at 497.681 kb on - strand, within ABZR87_RS02325 at 497.784 kb on + strand at 497.785 kb on - strand at 497.785 kb on - strand at 497.806 kb on + strand at 497.806 kb on + strand at 497.834 kb on - strand at 497.872 kb on + strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.876 kb on - strand at 497.876 kb on - strand at 498.031 kb on + strand, within ABZR87_RS02330 at 498.043 kb on + strand, within ABZR87_RS02330 at 498.136 kb on + strand, within ABZR87_RS02330 at 498.137 kb on - strand, within ABZR87_RS02330 at 498.137 kb on - strand, within ABZR87_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 496,054 + ABZR87_RS02315 0.39 -2.1 496,054 + ABZR87_RS02315 0.39 -0.7 496,055 - ABZR87_RS02315 0.39 +2.0 496,254 + ABZR87_RS02315 0.57 -0.4 496,255 - ABZR87_RS02315 0.57 -1.7 496,290 - ABZR87_RS02315 0.60 +0.9 496,339 + ABZR87_RS02315 0.65 -2.3 496,340 - ABZR87_RS02315 0.65 -1.6 496,340 - ABZR87_RS02315 0.65 +1.3 496,340 - ABZR87_RS02315 0.65 +2.8 496,340 - ABZR87_RS02315 0.65 -1.2 496,340 - ABZR87_RS02315 0.65 +0.4 496,521 + ABZR87_RS02315 0.81 -0.5 496,521 + ABZR87_RS02315 0.81 +0.7 496,522 - ABZR87_RS02315 0.81 -1.0 496,522 - ABZR87_RS02315 0.81 +2.3 496,522 - ABZR87_RS02315 0.81 -2.5 496,792 + +0.8 496,792 + -2.3 496,792 + -0.4 496,793 - -0.4 496,793 - +4.1 496,793 - -0.5 496,793 - -0.9 496,820 + -0.6 496,821 - -2.6 496,821 - +0.2 496,930 + ABZR87_RS02320 0.38 -1.1 496,930 + ABZR87_RS02320 0.38 -1.3 496,930 + ABZR87_RS02320 0.38 -1.3 496,931 - ABZR87_RS02320 0.38 -2.5 496,931 - ABZR87_RS02320 0.38 -2.1 497,161 + +1.0 497,162 - -1.4 497,179 + -0.2 497,179 + -4.0 497,179 + -1.1 497,180 - -0.7 497,180 - -4.3 497,180 - -2.1 497,367 + ABZR87_RS02325 0.32 -0.6 497,527 + ABZR87_RS02325 0.57 +0.6 497,527 + ABZR87_RS02325 0.57 -0.1 497,528 - ABZR87_RS02325 0.57 -1.9 497,528 - ABZR87_RS02325 0.57 -2.9 497,572 + ABZR87_RS02325 0.64 +0.7 497,572 + ABZR87_RS02325 0.64 -1.3 497,573 - ABZR87_RS02325 0.64 -0.6 497,660 + ABZR87_RS02325 0.78 -1.2 497,661 - ABZR87_RS02325 0.78 -2.9 497,680 + ABZR87_RS02325 0.81 -0.2 497,681 - ABZR87_RS02325 0.81 -1.0 497,784 + -2.3 497,785 - +0.8 497,785 - -0.5 497,806 + -4.1 497,806 + -3.0 497,834 - -2.6 497,872 + -0.7 497,873 - +1.6 497,873 - -0.4 497,873 - +0.4 497,873 - -1.4 497,876 - -2.4 497,876 - -0.4 498,031 + ABZR87_RS02330 0.11 +0.6 498,043 + ABZR87_RS02330 0.12 -2.8 498,136 + ABZR87_RS02330 0.17 -1.1 498,137 - ABZR87_RS02330 0.17 -3.0 498,137 - ABZR87_RS02330 0.17 -1.9
Or see this region's nucleotide sequence