Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01695 and ABZR87_RS01700 are separated by 66 nucleotides ABZR87_RS01700 and ABZR87_RS01705 are separated by 325 nucleotides ABZR87_RS01705 and ABZR87_RS01710 are separated by 108 nucleotides
ABZR87_RS01695: ABZR87_RS01695 - collagen-like triple helix repeat-containing protein, at 355,875 to 357,032
_RS01695
ABZR87_RS01700: ABZR87_RS01700 - DUF2147 domain-containing protein, at 357,099 to 357,554
_RS01700
ABZR87_RS01705: ABZR87_RS01705 - hypothetical protein, at 357,880 to 359,220
_RS01705
ABZR87_RS01710: ABZR87_RS01710 - DMT family transporter, at 359,329 to 360,225
_RS01710
Position (kb) 357
358
359
360 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 357.107 kb on + strand at 357.107 kb on + strand at 357.107 kb on + strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.447 kb on + strand, within ABZR87_RS01700 at 357.448 kb on - strand, within ABZR87_RS01700 at 357.576 kb on + strand at 357.576 kb on + strand at 357.665 kb on - strand at 357.665 kb on - strand at 357.702 kb on - strand at 357.725 kb on + strand at 357.725 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.859 kb on + strand at 357.860 kb on - strand at 357.875 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand at 358.166 kb on + strand, within ABZR87_RS01705 at 358.167 kb on - strand, within ABZR87_RS01705 at 358.255 kb on + strand, within ABZR87_RS01705 at 358.256 kb on - strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.567 kb on + strand, within ABZR87_RS01705 at 358.568 kb on - strand, within ABZR87_RS01705 at 358.568 kb on - strand, within ABZR87_RS01705 at 358.756 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.895 kb on - strand, within ABZR87_RS01705 at 359.055 kb on + strand, within ABZR87_RS01705 at 359.055 kb on + strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.218 kb on + strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.290 kb on + strand at 359.291 kb on - strand at 359.291 kb on - strand at 359.291 kb on - strand at 359.485 kb on + strand, within ABZR87_RS01710 at 359.485 kb on + strand, within ABZR87_RS01710 at 359.486 kb on - strand, within ABZR87_RS01710 at 359.486 kb on - strand, within ABZR87_RS01710 at 359.578 kb on + strand, within ABZR87_RS01710 at 359.579 kb on - strand, within ABZR87_RS01710 at 359.579 kb on - strand, within ABZR87_RS01710 at 359.614 kb on + strand, within ABZR87_RS01710 at 359.614 kb on + strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.799 kb on + strand, within ABZR87_RS01710 at 359.800 kb on - strand, within ABZR87_RS01710 at 359.800 kb on - strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.804 kb on - strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 357,107 + -0.5 357,107 + -0.4 357,107 + -2.1 357,108 - +0.3 357,108 - -0.4 357,108 - +3.2 357,108 - +1.0 357,108 - +1.9 357,108 - -2.4 357,447 + ABZR87_RS01700 0.76 +0.9 357,448 - ABZR87_RS01700 0.77 -2.0 357,576 + -2.2 357,576 + -0.6 357,665 - -4.0 357,665 - -1.2 357,702 - +0.5 357,725 + -2.6 357,725 + -0.6 357,836 + +1.4 357,836 + +0.4 357,836 + -2.9 357,836 + -1.2 357,836 + +0.1 357,836 + -0.3 357,836 + +1.7 357,837 - +0.1 357,837 - +1.2 357,837 - -1.7 357,837 - +1.7 357,837 - +0.6 357,837 - +1.1 357,837 - -0.5 357,837 - +2.4 357,837 - +1.0 357,837 - -2.7 357,837 - +0.2 357,859 + +0.2 357,860 - -2.6 357,875 + -0.8 357,949 + -3.3 357,949 + -0.0 357,949 + +1.9 357,949 + +1.5 357,950 - -3.6 357,950 - -1.7 357,950 - -0.5 357,950 - -1.1 358,166 + ABZR87_RS01705 0.21 -0.4 358,167 - ABZR87_RS01705 0.21 +3.1 358,255 + ABZR87_RS01705 0.28 -1.1 358,256 - ABZR87_RS01705 0.28 +2.1 358,429 + ABZR87_RS01705 0.41 +1.1 358,429 + ABZR87_RS01705 0.41 +2.0 358,429 + ABZR87_RS01705 0.41 +2.2 358,429 + ABZR87_RS01705 0.41 +0.2 358,429 + ABZR87_RS01705 0.41 -0.8 358,430 - ABZR87_RS01705 0.41 +3.0 358,430 - ABZR87_RS01705 0.41 +0.8 358,456 + ABZR87_RS01705 0.43 +0.1 358,456 + ABZR87_RS01705 0.43 -1.6 358,456 + ABZR87_RS01705 0.43 -3.4 358,456 + ABZR87_RS01705 0.43 -1.6 358,457 - ABZR87_RS01705 0.43 -0.4 358,457 - ABZR87_RS01705 0.43 +0.4 358,457 - ABZR87_RS01705 0.43 +2.1 358,457 - ABZR87_RS01705 0.43 +0.7 358,567 + ABZR87_RS01705 0.51 -1.8 358,568 - ABZR87_RS01705 0.51 -0.7 358,568 - ABZR87_RS01705 0.51 +0.5 358,756 + ABZR87_RS01705 0.65 -1.8 358,894 + ABZR87_RS01705 0.76 +0.4 358,894 + ABZR87_RS01705 0.76 -3.0 358,894 + ABZR87_RS01705 0.76 -2.9 358,895 - ABZR87_RS01705 0.76 +2.8 359,055 + ABZR87_RS01705 0.88 -2.2 359,055 + ABZR87_RS01705 0.88 +2.3 359,056 - ABZR87_RS01705 0.88 +0.5 359,056 - ABZR87_RS01705 0.88 +0.3 359,056 - ABZR87_RS01705 0.88 -4.0 359,056 - ABZR87_RS01705 0.88 +1.6 359,056 - ABZR87_RS01705 0.88 -3.3 359,218 + +0.8 359,219 - -0.8 359,219 - -1.1 359,219 - +0.0 359,219 - +2.0 359,219 - +2.3 359,290 + -1.1 359,291 - -3.9 359,291 - +1.8 359,291 - -3.4 359,485 + ABZR87_RS01710 0.17 -3.1 359,485 + ABZR87_RS01710 0.17 -1.6 359,486 - ABZR87_RS01710 0.18 -0.8 359,486 - ABZR87_RS01710 0.18 +0.8 359,578 + ABZR87_RS01710 0.28 -0.4 359,579 - ABZR87_RS01710 0.28 -3.7 359,579 - ABZR87_RS01710 0.28 -0.4 359,614 + ABZR87_RS01710 0.32 +0.2 359,614 + ABZR87_RS01710 0.32 +1.0 359,615 - ABZR87_RS01710 0.32 -0.6 359,615 - ABZR87_RS01710 0.32 +0.3 359,615 - ABZR87_RS01710 0.32 -1.5 359,615 - ABZR87_RS01710 0.32 -1.0 359,799 + ABZR87_RS01710 0.52 -0.0 359,800 - ABZR87_RS01710 0.53 -1.6 359,800 - ABZR87_RS01710 0.53 +0.2 359,803 + ABZR87_RS01710 0.53 +0.6 359,803 + ABZR87_RS01710 0.53 +1.4 359,803 + ABZR87_RS01710 0.53 +2.4 359,804 - ABZR87_RS01710 0.53 -1.5 359,836 + ABZR87_RS01710 0.57 -1.7 359,836 + ABZR87_RS01710 0.57 +2.5 359,836 + ABZR87_RS01710 0.57 -0.3 359,837 - ABZR87_RS01710 0.57 -1.9 359,837 - ABZR87_RS01710 0.57 +2.2 359,837 - ABZR87_RS01710 0.57 +0.3 359,837 - ABZR87_RS01710 0.57 +0.1
Or see this region's nucleotide sequence