Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01355

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01340 and ABZR87_RS01345 are separated by 82 nucleotidesABZR87_RS01345 and ABZR87_RS01350 are separated by 68 nucleotidesABZR87_RS01350 and ABZR87_RS01355 overlap by 4 nucleotidesABZR87_RS01355 and ABZR87_RS01360 are separated by 162 nucleotides ABZR87_RS01340: ABZR87_RS01340 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 279,556 to 280,695 _RS01340 ABZR87_RS01345: ABZR87_RS01345 - aspartate 1-decarboxylase, at 280,778 to 281,140 _RS01345 ABZR87_RS01350: ABZR87_RS01350 - NAD(P) transhydrogenase subunit alpha, at 281,209 to 281,538 _RS01350 ABZR87_RS01355: ABZR87_RS01355 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 281,535 to 282,995 _RS01355 ABZR87_RS01360: ABZR87_RS01360 - response regulator, at 283,158 to 284,195 _RS01360 Position (kb) 281 282 283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 280.543 kb on + strand, within ABZR87_RS01340at 280.543 kb on + strand, within ABZR87_RS01340at 280.551 kb on + strand, within ABZR87_RS01340at 280.693 kb on + strandat 280.950 kb on - strand, within ABZR87_RS01345at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.793 kb on + strand, within ABZR87_RS01355at 281.794 kb on - strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.877 kb on - strand, within ABZR87_RS01355at 281.877 kb on - strand, within ABZR87_RS01355at 282.028 kb on + strand, within ABZR87_RS01355at 282.029 kb on - strand, within ABZR87_RS01355at 282.039 kb on + strand, within ABZR87_RS01355at 282.039 kb on + strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.202 kb on + strand, within ABZR87_RS01355at 282.203 kb on - strand, within ABZR87_RS01355at 282.203 kb on - strand, within ABZR87_RS01355at 282.264 kb on + strand, within ABZR87_RS01355at 282.264 kb on + strand, within ABZR87_RS01355at 282.265 kb on - strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.580 kb on + strand, within ABZR87_RS01355at 282.580 kb on + strand, within ABZR87_RS01355at 282.581 kb on - strand, within ABZR87_RS01355at 282.581 kb on - strand, within ABZR87_RS01355at 282.627 kb on + strand, within ABZR87_RS01355at 282.627 kb on + strand, within ABZR87_RS01355at 282.627 kb on + strand, within ABZR87_RS01355at 282.627 kb on + strand, within ABZR87_RS01355at 282.628 kb on - strand, within ABZR87_RS01355at 282.628 kb on - strand, within ABZR87_RS01355at 282.699 kb on + strand, within ABZR87_RS01355at 282.846 kb on + strand, within ABZR87_RS01355at 282.846 kb on + strand, within ABZR87_RS01355at 282.846 kb on + strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.847 kb on - strand, within ABZR87_RS01355at 282.921 kb on + strandat 282.922 kb on - strandat 282.922 kb on - strandat 282.922 kb on - strandat 282.994 kb on - strandat 283.081 kb on + strandat 283.081 kb on + strandat 283.081 kb on + strandat 283.082 kb on - strandat 283.082 kb on - strandat 283.082 kb on - strandat 283.086 kb on + strandat 283.086 kb on + strandat 283.087 kb on - strandat 283.087 kb on - strandat 283.087 kb on - strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.158 kb on - strandat 283.158 kb on - strandat 283.158 kb on - strandat 283.158 kb on - strandat 283.158 kb on - strandat 283.185 kb on + strandat 283.185 kb on + strandat 283.186 kb on - strandat 283.186 kb on - strandat 283.426 kb on - strand, within ABZR87_RS01360at 283.483 kb on - strand, within ABZR87_RS01360at 283.617 kb on + strand, within ABZR87_RS01360at 283.617 kb on + strand, within ABZR87_RS01360at 283.617 kb on + strand, within ABZR87_RS01360at 283.617 kb on + strand, within ABZR87_RS01360at 283.686 kb on + strand, within ABZR87_RS01360at 283.686 kb on + strand, within ABZR87_RS01360at 283.686 kb on + strand, within ABZR87_RS01360at 283.686 kb on + strand, within ABZR87_RS01360at 283.687 kb on - strand, within ABZR87_RS01360at 283.687 kb on - strand, within ABZR87_RS01360at 283.687 kb on - strand, within ABZR87_RS01360at 283.687 kb on - strand, within ABZR87_RS01360at 283.687 kb on - strand, within ABZR87_RS01360at 283.809 kb on + strand, within ABZR87_RS01360at 283.809 kb on + strand, within ABZR87_RS01360at 283.809 kb on + strand, within ABZR87_RS01360at 283.809 kb on + strand, within ABZR87_RS01360at 283.809 kb on + strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.810 kb on - strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.812 kb on + strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.813 kb on - strand, within ABZR87_RS01360at 283.818 kb on + strand, within ABZR87_RS01360at 283.926 kb on + strand, within ABZR87_RS01360at 283.926 kb on + strand, within ABZR87_RS01360at 283.926 kb on + strand, within ABZR87_RS01360at 283.926 kb on + strand, within ABZR87_RS01360at 283.927 kb on - strand, within ABZR87_RS01360at 283.927 kb on - strand, within ABZR87_RS01360at 283.927 kb on - strand, within ABZR87_RS01360at 283.927 kb on - strand, within ABZR87_RS01360

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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280,543 + ABZR87_RS01340 0.87 +0.5
280,543 + ABZR87_RS01340 0.87 -0.2
280,551 + ABZR87_RS01340 0.87 +0.9
280,693 + -0.4
280,950 - ABZR87_RS01345 0.47 +2.2
281,263 + ABZR87_RS01350 0.16 -1.2
281,263 + ABZR87_RS01350 0.16 +2.0
281,263 + ABZR87_RS01350 0.16 +0.1
281,264 - ABZR87_RS01350 0.17 +1.9
281,264 - ABZR87_RS01350 0.17 +1.0
281,264 - ABZR87_RS01350 0.17 +0.8
281,264 - ABZR87_RS01350 0.17 -0.8
281,264 - ABZR87_RS01350 0.17 -1.6
281,272 + ABZR87_RS01350 0.19 +1.1
281,272 + ABZR87_RS01350 0.19 -0.6
281,272 + ABZR87_RS01350 0.19 +2.0
281,307 + ABZR87_RS01350 0.30 +1.5
281,307 + ABZR87_RS01350 0.30 -3.4
281,307 + ABZR87_RS01350 0.30 -0.0
281,308 - ABZR87_RS01350 0.30 +2.0
281,308 - ABZR87_RS01350 0.30 -2.7
281,308 - ABZR87_RS01350 0.30 -0.5
281,562 + -0.1
281,562 + -0.3
281,562 + +0.5
281,562 + +0.8
281,562 + +1.9
281,562 + -3.5
281,563 - +1.1
281,563 - +0.2
281,563 - -0.3
281,563 - +1.2
281,691 + ABZR87_RS01355 0.11 -2.8
281,691 + ABZR87_RS01355 0.11 -2.0
281,691 + ABZR87_RS01355 0.11 -0.5
281,691 + ABZR87_RS01355 0.11 -0.9
281,691 + ABZR87_RS01355 0.11 +2.1
281,692 - ABZR87_RS01355 0.11 -1.7
281,692 - ABZR87_RS01355 0.11 -3.2
281,692 - ABZR87_RS01355 0.11 -1.7
281,692 - ABZR87_RS01355 0.11 +0.5
281,692 - ABZR87_RS01355 0.11 +1.5
281,692 - ABZR87_RS01355 0.11 -3.2
281,692 - ABZR87_RS01355 0.11 +0.6
281,692 - ABZR87_RS01355 0.11 -3.6
281,692 - ABZR87_RS01355 0.11 -3.5
281,793 + ABZR87_RS01355 0.18 -0.7
281,794 - ABZR87_RS01355 0.18 +0.8
281,876 + ABZR87_RS01355 0.23 -1.6
281,876 + ABZR87_RS01355 0.23 -3.3
281,876 + ABZR87_RS01355 0.23 -2.4
281,876 + ABZR87_RS01355 0.23 +2.5
281,876 + ABZR87_RS01355 0.23 +2.3
281,877 - ABZR87_RS01355 0.23 +1.0
281,877 - ABZR87_RS01355 0.23 +0.6
282,028 + ABZR87_RS01355 0.34 +0.8
282,029 - ABZR87_RS01355 0.34 -1.1
282,039 + ABZR87_RS01355 0.34 +0.1
282,039 + ABZR87_RS01355 0.34 +1.0
282,040 - ABZR87_RS01355 0.35 +1.5
282,040 - ABZR87_RS01355 0.35 -3.1
282,040 - ABZR87_RS01355 0.35 +1.3
282,040 - ABZR87_RS01355 0.35 +1.8
282,202 + ABZR87_RS01355 0.46 +0.2
282,203 - ABZR87_RS01355 0.46 -0.2
282,203 - ABZR87_RS01355 0.46 -0.8
282,264 + ABZR87_RS01355 0.50 -1.1
282,264 + ABZR87_RS01355 0.50 +2.0
282,265 - ABZR87_RS01355 0.50 -0.4
282,363 + ABZR87_RS01355 0.57 +1.3
282,363 + ABZR87_RS01355 0.57 -1.0
282,363 + ABZR87_RS01355 0.57 +0.9
282,363 + ABZR87_RS01355 0.57 -3.1
282,363 + ABZR87_RS01355 0.57 -3.7
282,364 - ABZR87_RS01355 0.57 +1.1
282,364 - ABZR87_RS01355 0.57 -0.2
282,364 - ABZR87_RS01355 0.57 +1.2
282,364 - ABZR87_RS01355 0.57 -0.1
282,580 + ABZR87_RS01355 0.72 +1.7
282,580 + ABZR87_RS01355 0.72 +0.8
282,581 - ABZR87_RS01355 0.72 +1.6
282,581 - ABZR87_RS01355 0.72 +1.9
282,627 + ABZR87_RS01355 0.75 -1.9
282,627 + ABZR87_RS01355 0.75 +0.5
282,627 + ABZR87_RS01355 0.75 -2.1
282,627 + ABZR87_RS01355 0.75 +0.4
282,628 - ABZR87_RS01355 0.75 +0.3
282,628 - ABZR87_RS01355 0.75 -0.9
282,699 + ABZR87_RS01355 0.80 -1.4
282,846 + ABZR87_RS01355 0.90 -0.2
282,846 + ABZR87_RS01355 0.90 -0.2
282,846 + ABZR87_RS01355 0.90 -1.3
282,847 - ABZR87_RS01355 0.90 +0.2
282,847 - ABZR87_RS01355 0.90 +0.7
282,847 - ABZR87_RS01355 0.90 -3.3
282,847 - ABZR87_RS01355 0.90 -3.8
282,847 - ABZR87_RS01355 0.90 +0.9
282,847 - ABZR87_RS01355 0.90 -2.1
282,921 + +1.5
282,922 - -3.2
282,922 - -0.7
282,922 - -1.5
282,994 - +0.8
283,081 + -2.1
283,081 + +1.1
283,081 + -0.5
283,082 - -2.7
283,082 - -1.6
283,082 - -1.9
283,086 + -1.0
283,086 + -2.7
283,087 - -0.9
283,087 - -1.0
283,087 - -1.9
283,157 + -3.2
283,157 + -3.6
283,157 + -1.2
283,157 + -2.2
283,157 + +1.2
283,157 + -1.6
283,157 + -3.4
283,157 + -3.1
283,158 - -3.0
283,158 - -1.5
283,158 - -2.9
283,158 - -0.8
283,158 - -3.1
283,185 + -1.9
283,185 + -1.5
283,186 - +0.1
283,186 - -0.3
283,426 - ABZR87_RS01360 0.26 -3.4
283,483 - ABZR87_RS01360 0.31 -2.6
283,617 + ABZR87_RS01360 0.44 -1.6
283,617 + ABZR87_RS01360 0.44 -1.8
283,617 + ABZR87_RS01360 0.44 -3.7
283,617 + ABZR87_RS01360 0.44 -1.8
283,686 + ABZR87_RS01360 0.51 +0.9
283,686 + ABZR87_RS01360 0.51 -3.2
283,686 + ABZR87_RS01360 0.51 -1.6
283,686 + ABZR87_RS01360 0.51 -0.4
283,687 - ABZR87_RS01360 0.51 -1.6
283,687 - ABZR87_RS01360 0.51 -0.6
283,687 - ABZR87_RS01360 0.51 -0.8
283,687 - ABZR87_RS01360 0.51 +1.3
283,687 - ABZR87_RS01360 0.51 +0.1
283,809 + ABZR87_RS01360 0.63 -1.9
283,809 + ABZR87_RS01360 0.63 -0.1
283,809 + ABZR87_RS01360 0.63 -3.7
283,809 + ABZR87_RS01360 0.63 -2.7
283,809 + ABZR87_RS01360 0.63 -1.9
283,810 - ABZR87_RS01360 0.63 -2.2
283,810 - ABZR87_RS01360 0.63 -3.2
283,810 - ABZR87_RS01360 0.63 -3.6
283,810 - ABZR87_RS01360 0.63 -2.4
283,810 - ABZR87_RS01360 0.63 -0.2
283,810 - ABZR87_RS01360 0.63 -3.0
283,812 + ABZR87_RS01360 0.63 -1.3
283,812 + ABZR87_RS01360 0.63 -2.6
283,812 + ABZR87_RS01360 0.63 -3.3
283,812 + ABZR87_RS01360 0.63 -3.6
283,812 + ABZR87_RS01360 0.63 -0.7
283,812 + ABZR87_RS01360 0.63 -0.7
283,812 + ABZR87_RS01360 0.63 -2.6
283,812 + ABZR87_RS01360 0.63 +0.0
283,812 + ABZR87_RS01360 0.63 -3.8
283,812 + ABZR87_RS01360 0.63 -2.4
283,812 + ABZR87_RS01360 0.63 -2.9
283,812 + ABZR87_RS01360 0.63 -2.4
283,812 + ABZR87_RS01360 0.63 -2.2
283,812 + ABZR87_RS01360 0.63 -3.6
283,813 - ABZR87_RS01360 0.63 -3.0
283,813 - ABZR87_RS01360 0.63 -1.3
283,813 - ABZR87_RS01360 0.63 -1.5
283,813 - ABZR87_RS01360 0.63 -0.9
283,813 - ABZR87_RS01360 0.63 -0.1
283,813 - ABZR87_RS01360 0.63 +1.3
283,813 - ABZR87_RS01360 0.63 -3.3
283,818 + ABZR87_RS01360 0.64 -3.0
283,926 + ABZR87_RS01360 0.74 +1.4
283,926 + ABZR87_RS01360 0.74 -3.6
283,926 + ABZR87_RS01360 0.74 -3.2
283,926 + ABZR87_RS01360 0.74 -0.4
283,927 - ABZR87_RS01360 0.74 -2.9
283,927 - ABZR87_RS01360 0.74 -0.5
283,927 - ABZR87_RS01360 0.74 -2.9
283,927 - ABZR87_RS01360 0.74 +0.3

Or see this region's nucleotide sequence