Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01060

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotidesABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotides ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065 Position (kb) 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 211.053 kb on + strand, within ABZR87_RS01055at 211.054 kb on - strand, within ABZR87_RS01055at 211.115 kb on + strand, within ABZR87_RS01055at 211.116 kb on - strand, within ABZR87_RS01055at 211.118 kb on - strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.670 kb on + strand, within ABZR87_RS01055at 211.804 kb on + strandat 211.804 kb on + strandat 211.805 kb on - strandat 211.848 kb on - strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.851 kb on - strandat 211.984 kb on + strandat 211.985 kb on - strandat 211.985 kb on - strandat 211.987 kb on - strandat 211.988 kb on + strandat 211.991 kb on - strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 212.943 kb on + strandat 212.944 kb on - strandat 212.944 kb on - strandat 213.027 kb on + strandat 213.028 kb on - strandat 213.028 kb on - strandat 213.032 kb on + strandat 213.188 kb on + strand, within ABZR87_RS01065at 213.581 kb on + strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.808 kb on + strand, within ABZR87_RS01065at 213.809 kb on - strand, within ABZR87_RS01065

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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211,053 + ABZR87_RS01055 0.20 -2.5
211,054 - ABZR87_RS01055 0.20 -2.0
211,115 + ABZR87_RS01055 0.26 +0.3
211,116 - ABZR87_RS01055 0.26 -2.8
211,118 - ABZR87_RS01055 0.27 -2.9
211,321 + ABZR87_RS01055 0.46 -3.2
211,321 + ABZR87_RS01055 0.46 -0.9
211,321 + ABZR87_RS01055 0.46 -2.9
211,321 + ABZR87_RS01055 0.46 -2.2
211,322 - ABZR87_RS01055 0.46 +1.7
211,322 - ABZR87_RS01055 0.46 -2.1
211,322 - ABZR87_RS01055 0.46 +1.4
211,322 - ABZR87_RS01055 0.46 -1.8
211,322 - ABZR87_RS01055 0.46 +0.2
211,322 - ABZR87_RS01055 0.46 -0.1
211,322 - ABZR87_RS01055 0.46 -1.3
211,322 - ABZR87_RS01055 0.46 -2.2
211,322 - ABZR87_RS01055 0.46 +0.9
211,322 - ABZR87_RS01055 0.46 -1.7
211,322 - ABZR87_RS01055 0.46 -3.4
211,322 - ABZR87_RS01055 0.46 -0.8
211,325 + ABZR87_RS01055 0.46 -0.2
211,325 + ABZR87_RS01055 0.46 +0.8
211,355 - ABZR87_RS01055 0.49 -1.4
211,355 - ABZR87_RS01055 0.49 +0.7
211,355 - ABZR87_RS01055 0.49 -3.5
211,670 + ABZR87_RS01055 0.79 -2.8
211,804 + -0.2
211,804 + +0.5
211,805 - +0.8
211,848 - -2.7
211,849 + +1.8
211,849 + +0.9
211,849 + -2.3
211,849 + -1.3
211,849 + -0.0
211,850 - -2.6
211,850 - -0.8
211,850 - -1.4
211,850 - -2.5
211,851 - -1.9
211,984 + +2.1
211,985 - +0.5
211,985 - -1.3
211,987 - +0.2
211,988 + -3.6
211,991 - +0.3
211,997 + +1.4
211,997 + +1.4
211,997 + +2.2
211,997 + -3.6
212,943 + -0.9
212,944 - -1.7
212,944 - -3.2
213,027 + +0.6
213,028 - +0.2
213,028 - -2.2
213,032 + -1.5
213,188 + ABZR87_RS01065 0.14 +2.0
213,581 + ABZR87_RS01065 0.37 +2.5
213,582 - ABZR87_RS01065 0.37 -1.7
213,582 - ABZR87_RS01065 0.37 -1.0
213,582 - ABZR87_RS01065 0.37 -3.4
213,702 + ABZR87_RS01065 0.44 +1.6
213,702 + ABZR87_RS01065 0.44 -0.2
213,703 - ABZR87_RS01065 0.44 +0.7
213,703 - ABZR87_RS01065 0.44 -1.9
213,703 - ABZR87_RS01065 0.44 -0.4
213,808 + ABZR87_RS01065 0.50 +0.9
213,809 - ABZR87_RS01065 0.50 +1.2

Or see this region's nucleotide sequence