Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00030

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotidesABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotidesABZR87_RS00030 and ABZR87_RS00035 are separated by 48 nucleotidesABZR87_RS00035 and ABZR87_RS00040 are separated by 75 nucleotides ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104 _RS00030 ABZR87_RS00035: ABZR87_RS00035 - ParA family protein, at 9,153 to 9,818 _RS00035 ABZR87_RS00040: ABZR87_RS00040 - cobyric acid synthase, at 9,894 to 11,390 _RS00040 Position (kb) 8 9 10Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strandat 8.199 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.243 kb on + strandat 8.243 kb on + strandat 8.252 kb on + strandat 8.252 kb on + strandat 9.171 kb on - strandat 9.171 kb on - strandat 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.383 kb on + strand, within ABZR87_RS00035at 9.383 kb on + strand, within ABZR87_RS00035at 9.384 kb on - strand, within ABZR87_RS00035at 9.384 kb on - strand, within ABZR87_RS00035at 9.389 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.801 kb on + strandat 9.801 kb on + strandat 9.802 kb on - strandat 9.802 kb on - strandat 9.888 kb on + strandat 9.888 kb on + strandat 9.888 kb on + strandat 9.889 kb on - strandat 9.889 kb on - strandat 9.889 kb on - strandat 9.994 kb on + strandat 9.994 kb on + strandat 9.995 kb on - strandat 9.995 kb on - strandat 10.078 kb on + strand, within ABZR87_RS00040at 10.078 kb on + strand, within ABZR87_RS00040at 10.079 kb on - strand, within ABZR87_RS00040at 10.079 kb on - strand, within ABZR87_RS00040

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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7,272 + ABZR87_RS00020 0.89 +1.5
7,272 + ABZR87_RS00020 0.89 -1.7
7,272 + ABZR87_RS00020 0.89 +2.3
7,272 + ABZR87_RS00020 0.89 +1.4
7,272 + ABZR87_RS00020 0.89 +2.6
7,278 + +1.7
7,278 + -1.5
7,278 + -1.5
8,199 + -3.1
8,211 + -1.0
8,211 + +1.4
8,211 + +0.7
8,243 + +0.4
8,243 + +1.3
8,252 + +0.3
8,252 + -3.1
9,171 - -0.8
9,171 - -1.3
9,301 + ABZR87_RS00035 0.22 -1.1
9,301 + ABZR87_RS00035 0.22 +0.5
9,301 + ABZR87_RS00035 0.22 +1.4
9,301 + ABZR87_RS00035 0.22 -0.1
9,301 + ABZR87_RS00035 0.22 -0.9
9,301 + ABZR87_RS00035 0.22 -2.7
9,302 - ABZR87_RS00035 0.22 -3.3
9,302 - ABZR87_RS00035 0.22 +1.0
9,302 - ABZR87_RS00035 0.22 -2.5
9,383 + ABZR87_RS00035 0.35 +0.8
9,383 + ABZR87_RS00035 0.35 -1.4
9,384 - ABZR87_RS00035 0.35 +1.1
9,384 - ABZR87_RS00035 0.35 -3.8
9,389 + ABZR87_RS00035 0.35 +0.5
9,520 + ABZR87_RS00035 0.55 -1.7
9,520 + ABZR87_RS00035 0.55 -1.5
9,520 + ABZR87_RS00035 0.55 -4.5
9,520 + ABZR87_RS00035 0.55 +0.9
9,801 + -0.2
9,801 + -0.8
9,802 - -3.2
9,802 - +2.4
9,888 + -0.2
9,888 + +1.5
9,888 + +0.6
9,889 - -0.8
9,889 - +0.6
9,889 - -3.0
9,994 + -1.0
9,994 + -3.4
9,995 - -2.1
9,995 - +1.7
10,078 + ABZR87_RS00040 0.12 -1.8
10,078 + ABZR87_RS00040 0.12 -2.0
10,079 - ABZR87_RS00040 0.12 -0.4
10,079 - ABZR87_RS00040 0.12 -1.6

Or see this region's nucleotide sequence