Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00005

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00005 and ABZR87_RS00010 are separated by 95 nucleotides ABZR87_RS00005: ABZR87_RS00005 - hypothetical protein, at 524 to 1,066 _RS00005 ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076 _RS00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 0.566 kb on - strandat 0.661 kb on + strand, within ABZR87_RS00005at 0.835 kb on - strand, within ABZR87_RS00005at 1.128 kb on + strandat 1.128 kb on + strandat 1.163 kb on + strandat 1.164 kb on - strandat 1.289 kb on + strandat 1.289 kb on + strandat 1.290 kb on - strandat 1.359 kb on + strandat 1.359 kb on + strandat 1.360 kb on - strandat 1.490 kb on + strandat 1.491 kb on - strandat 1.585 kb on + strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.608 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.707 kb on - strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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566 - -2.9
661 + ABZR87_RS00005 0.25 -4.0
835 - ABZR87_RS00005 0.57 -1.7
1,128 + +1.2
1,128 + -0.0
1,163 + +0.4
1,164 - +0.1
1,289 + -0.8
1,289 + -0.6
1,290 - -3.6
1,359 + +0.4
1,359 + -4.5
1,360 - +1.2
1,490 + -1.2
1,491 - -4.0
1,585 + ABZR87_RS00010 0.11 -0.4
1,586 - ABZR87_RS00010 0.11 -3.8
1,586 - ABZR87_RS00010 0.11 -0.4
1,586 - ABZR87_RS00010 0.11 -1.9
1,586 - ABZR87_RS00010 0.11 -1.4
1,586 - ABZR87_RS00010 0.11 -0.1
1,608 + ABZR87_RS00010 0.11 -1.3
1,706 + ABZR87_RS00010 0.14 +1.7
1,706 + ABZR87_RS00010 0.14 +1.1
1,707 - ABZR87_RS00010 0.14 -0.1
1,727 + ABZR87_RS00010 0.14 +1.3
1,727 + ABZR87_RS00010 0.14 +1.0
1,727 + ABZR87_RS00010 0.14 -2.4
1,728 - ABZR87_RS00010 0.14 -1.8
1,728 - ABZR87_RS00010 0.14 -1.3
1,728 - ABZR87_RS00010 0.14 -2.3
1,728 - ABZR87_RS00010 0.14 -3.6

Or see this region's nucleotide sequence