Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000588 and ABIE53_000589 are separated by 62 nucleotides ABIE53_000589 and ABIE53_000590 are separated by 46 nucleotides
ABIE53_000588: ABIE53_000588 - butyryl-CoA dehydrogenase, at 644,969 to 646,099
_000588
ABIE53_000589: ABIE53_000589 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 646,162 to 646,839
_000589
ABIE53_000590: ABIE53_000590 - acetyl-CoA C-acetyltransferase, at 646,886 to 648,106
_000590
Position (kb) 646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 645.528 kb on + strand, within ABIE53_000588 at 645.528 kb on + strand, within ABIE53_000588 at 645.528 kb on + strand, within ABIE53_000588 at 645.528 kb on + strand, within ABIE53_000588 at 645.554 kb on - strand, within ABIE53_000588 at 645.663 kb on + strand, within ABIE53_000588 at 645.663 kb on + strand, within ABIE53_000588 at 645.663 kb on + strand, within ABIE53_000588 at 645.664 kb on - strand, within ABIE53_000588 at 645.664 kb on - strand, within ABIE53_000588 at 645.805 kb on - strand, within ABIE53_000588 at 645.859 kb on + strand, within ABIE53_000588 at 645.954 kb on + strand, within ABIE53_000588 at 645.979 kb on + strand, within ABIE53_000588 at 645.980 kb on - strand, within ABIE53_000588 at 645.980 kb on - strand, within ABIE53_000588 at 646.130 kb on + strand at 646.164 kb on - strand at 646.187 kb on + strand at 646.188 kb on - strand at 646.188 kb on - strand at 646.193 kb on + strand at 646.193 kb on + strand at 646.193 kb on + strand at 646.194 kb on - strand at 646.194 kb on - strand at 646.194 kb on - strand at 646.404 kb on - strand, within ABIE53_000589 at 646.599 kb on - strand, within ABIE53_000589 at 646.599 kb on - strand, within ABIE53_000589 at 646.681 kb on + strand, within ABIE53_000589 at 646.681 kb on + strand, within ABIE53_000589 at 646.682 kb on - strand, within ABIE53_000589 at 646.682 kb on - strand, within ABIE53_000589 at 646.694 kb on + strand, within ABIE53_000589 at 646.694 kb on + strand, within ABIE53_000589 at 646.694 kb on + strand, within ABIE53_000589 at 646.694 kb on + strand, within ABIE53_000589 at 646.694 kb on + strand, within ABIE53_000589 at 646.854 kb on + strand at 646.855 kb on - strand at 646.855 kb on - strand at 647.127 kb on + strand, within ABIE53_000590 at 647.128 kb on - strand, within ABIE53_000590 at 647.128 kb on - strand, within ABIE53_000590 at 647.403 kb on + strand, within ABIE53_000590 at 647.403 kb on + strand, within ABIE53_000590 at 647.403 kb on + strand, within ABIE53_000590 at 647.404 kb on - strand, within ABIE53_000590 at 647.404 kb on - strand, within ABIE53_000590 at 647.404 kb on - strand, within ABIE53_000590 at 647.611 kb on - strand, within ABIE53_000590 at 647.631 kb on + strand, within ABIE53_000590 at 647.632 kb on - strand, within ABIE53_000590 at 647.697 kb on + strand, within ABIE53_000590 at 647.697 kb on + strand, within ABIE53_000590 at 647.698 kb on - strand, within ABIE53_000590
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 645,528 + ABIE53_000588 0.49 +1.1 645,528 + ABIE53_000588 0.49 -1.2 645,528 + ABIE53_000588 0.49 -1.9 645,528 + ABIE53_000588 0.49 +0.1 645,554 - ABIE53_000588 0.52 +0.1 645,663 + ABIE53_000588 0.61 +2.0 645,663 + ABIE53_000588 0.61 +0.1 645,663 + ABIE53_000588 0.61 +0.8 645,664 - ABIE53_000588 0.61 +2.1 645,664 - ABIE53_000588 0.61 +0.7 645,805 - ABIE53_000588 0.74 -0.8 645,859 + ABIE53_000588 0.79 -3.0 645,954 + ABIE53_000588 0.87 +0.1 645,979 + ABIE53_000588 0.89 -3.1 645,980 - ABIE53_000588 0.89 +0.3 645,980 - ABIE53_000588 0.89 +0.1 646,130 + -0.5 646,164 - -1.7 646,187 + -0.6 646,188 - -1.7 646,188 - +0.5 646,193 + +1.8 646,193 + +0.8 646,193 + -0.6 646,194 - -0.0 646,194 - +0.8 646,194 - -0.5 646,404 - ABIE53_000589 0.36 -3.2 646,599 - ABIE53_000589 0.64 -0.4 646,599 - ABIE53_000589 0.64 +0.9 646,681 + ABIE53_000589 0.77 -0.3 646,681 + ABIE53_000589 0.77 -0.7 646,682 - ABIE53_000589 0.77 +0.1 646,682 - ABIE53_000589 0.77 +1.1 646,694 + ABIE53_000589 0.78 -0.9 646,694 + ABIE53_000589 0.78 +1.1 646,694 + ABIE53_000589 0.78 +2.9 646,694 + ABIE53_000589 0.78 -0.4 646,694 + ABIE53_000589 0.78 -0.8 646,854 + +1.1 646,855 - +2.1 646,855 - -0.5 647,127 + ABIE53_000590 0.20 -0.9 647,128 - ABIE53_000590 0.20 -0.9 647,128 - ABIE53_000590 0.20 +0.2 647,403 + ABIE53_000590 0.42 -0.5 647,403 + ABIE53_000590 0.42 -0.8 647,403 + ABIE53_000590 0.42 -2.5 647,404 - ABIE53_000590 0.42 +1.1 647,404 - ABIE53_000590 0.42 -0.9 647,404 - ABIE53_000590 0.42 +3.7 647,611 - ABIE53_000590 0.59 -0.1 647,631 + ABIE53_000590 0.61 -0.6 647,632 - ABIE53_000590 0.61 +0.4 647,697 + ABIE53_000590 0.66 +0.1 647,697 + ABIE53_000590 0.66 -1.2 647,698 - ABIE53_000590 0.67 +0.7
Or see this region's nucleotide sequence