Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3152 and DvMF_3153 are separated by 67 nucleotides DvMF_3153 and DvMF_3154 are separated by 116 nucleotides DvMF_3154 and DvMF_3155 are separated by 4 nucleotides
DvMF_3152: DvMF_3152 - extracellular solute-binding protein family 3 (RefSeq), at 3,977,022 to 3,977,837
_3152
DvMF_3153: DvMF_3153 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,977,905 to 3,978,606
_3153
DvMF_3154: DvMF_3154 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,978,723 to 3,979,412
_3154
DvMF_3155: DvMF_3155 - ribosomal L11 methyltransferase (RefSeq), at 3,979,417 to 3,980,277
_3155
Position (kb)
3978
3979
3980 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3977.842 kb on + strand at 3978.157 kb on + strand, within DvMF_3153 at 3978.178 kb on - strand, within DvMF_3153 at 3978.232 kb on + strand, within DvMF_3153 at 3978.297 kb on + strand, within DvMF_3153 at 3978.438 kb on - strand, within DvMF_3153 at 3978.490 kb on + strand, within DvMF_3153 at 3978.568 kb on - strand at 3978.669 kb on + strand at 3978.821 kb on - strand, within DvMF_3154 at 3978.861 kb on - strand, within DvMF_3154 at 3978.991 kb on + strand, within DvMF_3154 at 3979.028 kb on - strand, within DvMF_3154 at 3979.458 kb on - strand at 3979.489 kb on + strand at 3979.497 kb on - strand at 3979.612 kb on + strand, within DvMF_3155 at 3979.822 kb on - strand, within DvMF_3155 at 3979.828 kb on - strand, within DvMF_3155 at 3980.388 kb on + strand at 3980.388 kb on + strand at 3980.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 3,977,842 + +0.2 3,978,157 + DvMF_3153 0.36 -0.5 3,978,178 - DvMF_3153 0.39 -1.0 3,978,232 + DvMF_3153 0.47 -1.4 3,978,297 + DvMF_3153 0.56 -0.0 3,978,438 - DvMF_3153 0.76 -0.9 3,978,490 + DvMF_3153 0.83 -0.9 3,978,568 - -0.7 3,978,669 + +0.4 3,978,821 - DvMF_3154 0.14 -1.4 3,978,861 - DvMF_3154 0.20 -1.7 3,978,991 + DvMF_3154 0.39 -0.6 3,979,028 - DvMF_3154 0.44 -1.5 3,979,458 - -0.8 3,979,489 + -1.7 3,979,497 - -0.9 3,979,612 + DvMF_3155 0.23 -0.6 3,979,822 - DvMF_3155 0.47 -2.2 3,979,828 - DvMF_3155 0.48 -3.1 3,980,388 + -0.3 3,980,388 + -2.1 3,980,396 - -0.4
Or see this region's nucleotide sequence