Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2977

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2975 and DvMF_2976 are separated by 1 nucleotidesDvMF_2976 and DvMF_2977 are separated by 113 nucleotidesDvMF_2977 and DvMF_2978 are separated by 177 nucleotidesDvMF_2978 and DvMF_2979 are separated by 139 nucleotides DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438 _2975 DvMF_2976: DvMF_2976 - 4-oxalocrotonate tautomerase (RefSeq), at 3,751,440 to 3,751,628 _2976 DvMF_2977: DvMF_2977 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,751,742 to 3,752,860 _2977 DvMF_2978: DvMF_2978 - hypothetical protein (RefSeq), at 3,753,038 to 3,753,370 _2978 DvMF_2979: DvMF_2979 - NADPH-dependent FMN reductase (RefSeq), at 3,753,510 to 3,754,124 _2979 Position (kb) 3751 3752 3753Strain fitness (log2 ratio) -3 -2 -1 0 1at 3750.993 kb on - strand, within DvMF_2975at 3751.030 kb on + strand, within DvMF_2975at 3751.058 kb on - strand, within DvMF_2975at 3751.223 kb on + strand, within DvMF_2975at 3751.264 kb on - strand, within DvMF_2975at 3751.285 kb on - strand, within DvMF_2975at 3752.360 kb on - strand, within DvMF_2977at 3752.384 kb on - strand, within DvMF_2977at 3752.966 kb on - strandat 3752.996 kb on + strandat 3753.151 kb on - strand, within DvMF_2978at 3753.232 kb on + strand, within DvMF_2978at 3753.439 kb on - strandat 3753.443 kb on + strandat 3753.564 kb on - strandat 3753.579 kb on - strand, within DvMF_2979at 3753.701 kb on - strand, within DvMF_2979

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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3,750,993 - DvMF_2975 0.13 -1.6
3,751,030 + DvMF_2975 0.20 -0.9
3,751,058 - DvMF_2975 0.25 -1.0
3,751,223 + DvMF_2975 0.58 -0.4
3,751,264 - DvMF_2975 0.66 -1.4
3,751,285 - DvMF_2975 0.70 -1.4
3,752,360 - DvMF_2977 0.55 -1.9
3,752,384 - DvMF_2977 0.57 -0.8
3,752,966 - -3.1
3,752,996 + -0.9
3,753,151 - DvMF_2978 0.34 -0.3
3,753,232 + DvMF_2978 0.58 -1.0
3,753,439 - -0.4
3,753,443 + +0.4
3,753,564 - -0.7
3,753,579 - DvMF_2979 0.11 -1.2
3,753,701 - DvMF_2979 0.31 -1.1

Or see this region's nucleotide sequence