Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2792

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2790 and DvMF_2791 are separated by 256 nucleotidesDvMF_2791 and DvMF_2792 are separated by 206 nucleotidesDvMF_2792 and DvMF_2793 are separated by 153 nucleotides DvMF_2790: DvMF_2790 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,533,449 to 3,534,366 _2790 DvMF_2791: DvMF_2791 - type IV pilus assembly PilZ (RefSeq), at 3,534,623 to 3,534,955 _2791 DvMF_2792: DvMF_2792 - YceI family protein (RefSeq), at 3,535,162 to 3,536,106 _2792 DvMF_2793: DvMF_2793 - Pirin domain protein (RefSeq), at 3,536,260 to 3,537,198 _2793 Position (kb) 3535 3536 3537Strain fitness (log2 ratio) -2 -1 0 1at 3534.196 kb on - strand, within DvMF_2790at 3534.260 kb on + strand, within DvMF_2790at 3534.268 kb on - strand, within DvMF_2790at 3534.515 kb on + strandat 3534.683 kb on - strand, within DvMF_2791at 3534.809 kb on - strand, within DvMF_2791at 3534.811 kb on + strand, within DvMF_2791at 3534.843 kb on - strand, within DvMF_2791at 3534.873 kb on - strand, within DvMF_2791at 3534.910 kb on - strand, within DvMF_2791at 3535.285 kb on + strand, within DvMF_2792at 3535.297 kb on + strand, within DvMF_2792at 3535.632 kb on + strand, within DvMF_2792at 3535.805 kb on - strand, within DvMF_2792at 3535.905 kb on - strand, within DvMF_2792at 3536.223 kb on - strandat 3536.493 kb on + strand, within DvMF_2793at 3536.493 kb on + strand, within DvMF_2793at 3536.530 kb on - strand, within DvMF_2793at 3536.700 kb on - strand, within DvMF_2793at 3536.876 kb on + strand, within DvMF_2793at 3536.923 kb on - strand, within DvMF_2793at 3536.991 kb on + strand, within DvMF_2793at 3537.084 kb on + strand, within DvMF_2793

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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3,534,196 - DvMF_2790 0.81 -0.4
3,534,260 + DvMF_2790 0.88 -1.0
3,534,268 - DvMF_2790 0.89 -1.4
3,534,515 + -1.7
3,534,683 - DvMF_2791 0.18 -0.8
3,534,809 - DvMF_2791 0.56 +0.1
3,534,811 + DvMF_2791 0.56 -1.8
3,534,843 - DvMF_2791 0.66 -1.3
3,534,873 - DvMF_2791 0.75 -0.4
3,534,910 - DvMF_2791 0.86 -0.0
3,535,285 + DvMF_2792 0.13 -0.5
3,535,297 + DvMF_2792 0.14 -0.4
3,535,632 + DvMF_2792 0.50 -0.4
3,535,805 - DvMF_2792 0.68 -0.1
3,535,905 - DvMF_2792 0.79 +0.1
3,536,223 - +0.3
3,536,493 + DvMF_2793 0.25 -0.8
3,536,493 + DvMF_2793 0.25 -1.5
3,536,530 - DvMF_2793 0.29 -0.4
3,536,700 - DvMF_2793 0.47 -1.5
3,536,876 + DvMF_2793 0.66 -0.5
3,536,923 - DvMF_2793 0.71 -0.4
3,536,991 + DvMF_2793 0.78 -0.9
3,537,084 + DvMF_2793 0.88 -0.7

Or see this region's nucleotide sequence