Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2764

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2763 and DvMF_2764 are separated by 53 nucleotidesDvMF_2764 and valS are separated by 217 nucleotides DvMF_2763: DvMF_2763 - ABC-type tungstate transport system, permease component (RefSeq), at 3,494,880 to 3,495,704 _2763 DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035 _2764 DvMF_2765: valS - valyl-tRNA synthetase (RefSeq), at 3,497,253 to 3,499,904 valS Position (kb) 3495 3496 3497 3498Strain fitness (log2 ratio) -2 -1 0 1 2at 3494.957 kb on - strandat 3494.957 kb on - strandat 3495.097 kb on - strand, within DvMF_2763at 3495.107 kb on - strand, within DvMF_2763at 3495.216 kb on - strand, within DvMF_2763at 3495.320 kb on + strand, within DvMF_2763at 3495.430 kb on - strand, within DvMF_2763at 3495.568 kb on - strand, within DvMF_2763at 3495.729 kb on + strandat 3495.915 kb on - strand, within DvMF_2764at 3495.961 kb on + strand, within DvMF_2764at 3496.558 kb on - strand, within DvMF_2764at 3496.656 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.743 kb on - strand, within DvMF_2764at 3496.854 kb on + strand, within DvMF_2764at 3496.862 kb on - strand, within DvMF_2764at 3496.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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3,494,957 - -1.2
3,494,957 - -0.1
3,495,097 - DvMF_2763 0.26 -1.2
3,495,107 - DvMF_2763 0.28 +2.3
3,495,216 - DvMF_2763 0.41 +0.3
3,495,320 + DvMF_2763 0.53 -0.1
3,495,430 - DvMF_2763 0.67 -0.5
3,495,568 - DvMF_2763 0.83 -0.5
3,495,729 + -1.6
3,495,915 - DvMF_2764 0.12 -1.5
3,495,961 + DvMF_2764 0.16 -2.2
3,496,558 - DvMF_2764 0.63 -2.4
3,496,656 + DvMF_2764 0.70 -0.7
3,496,735 + DvMF_2764 0.76 +0.3
3,496,735 + DvMF_2764 0.76 -0.7
3,496,735 + DvMF_2764 0.76 -0.7
3,496,743 - DvMF_2764 0.77 -1.9
3,496,854 + DvMF_2764 0.86 +0.0
3,496,862 - DvMF_2764 0.86 -1.4
3,496,964 + -1.5

Or see this region's nucleotide sequence